miRNEST 2.0, an integrative microRNA resource :: BLAST
>54802_vvi-miR168:pmrd
Length = 132
Score = 254 bits (128), Expect = 2e-68
Identities = 131/132 (99%)
Strand = Plus / Plus
Query: 16 ggtctctaattcgcttggtgcaggtcgggaaccgacttcgccgctccggcagcgccggag 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctctaattcgcttggtgcaggtcgggaaccgacttcgccgctccggcagcgccggag 60
Query: 76 gcacgcggcggcctacgatgggttgctgagcgaattccgatcccgccttgcatcaactga 135
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcacgcggcggcctacgattggttgctgagcgaattccgatcccgccttgcatcaactga 120
Query: 136 atcggagacggc 147
||||||||||||
Sbjct: 121 atcggagacggc 132
>48560_gma-miR168:pmrd
Length = 125
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 16 ggtctctaattcgcttggtgcaggtcgggaaccg 49
||||||||||||||||||||||||||||||||||
Sbjct: 9 ggtctctaattcgcttggtgcaggtcgggaaccg 42
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 114 gatcccgccttgcatcaactgaatcggagacggcggtga 152
||||||||||||||||||||||||||||| | |||||||
Sbjct: 85 gatcccgccttgcatcaactgaatcggaggccgcggtga 123
>54388_rco-miR168:pmrd
Length = 156
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 16 ggtctctaattcgcttggtgcaggtcgggaac 47
||||||||||||||||||||||||||||||||
Sbjct: 9 ggtctctaattcgcttggtgcaggtcgggaac 40
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 114 gatcccgccttgcatcaactgaatcggagac 144
|||||||||||||||||||||||||| ||||
Sbjct: 116 gatcccgccttgcatcaactgaatcgaagac 146
>51651_ptc-miR168b:pmrd
Length = 136
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 16 ggtctctaattcgcttggtgcaggtcgggaac 47
||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctctaattcgcttggtgcaggtcgggaac 32
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 114 gatcccgccttgcatcaactgaatcggaga 143
||||||||||||||||||||||||||||||
Sbjct: 107 gatcccgccttgcatcaactgaatcggaga 136
>51650_ptc-miR168a:pmrd
Length = 160
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 114 gatcccgccttgcatcaactgaatcggag 142
|||||||||||||||||||||||||||||
Sbjct: 131 gatcccgccttgcatcaactgaatcggag 159
Score = 56.0 bits (28), Expect = 8e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 16 ggtctctaattcgcttggtgcaggtcgggaac 47
||||||| ||||||||||||||||||||||||
Sbjct: 1 ggtctctgattcgcttggtgcaggtcgggaac 32
>47339_ath-miRf10239-akr:pmrd
Length = 129
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 114 gatcccgccttgcatcaactgaatcgga 141
||||||||||||||||||||||||||||
Sbjct: 95 gatcccgccttgcatcaactgaatcgga 122
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 attcgcttggtgcaggtcgggaacc 48
|||||||||||||||||||||||||
Sbjct: 11 attcgcttggtgcaggtcgggaacc 35
>46957_ath-miR168a:pmrd
Length = 138
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 114 gatcccgccttgcatcaactgaatcgga 141
||||||||||||||||||||||||||||
Sbjct: 100 gatcccgccttgcatcaactgaatcgga 127
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 attcgcttggtgcaggtcgggaacc 48
|||||||||||||||||||||||||
Sbjct: 16 attcgcttggtgcaggtcgggaacc 40
>55000_zma-miR168b:pmrd
Length = 104
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 114 gatcccgccttgcatcaactgaatcggagacggcg 148
|||||||||||||||||| |||||||||| |||||
Sbjct: 64 gatcccgccttgcatcaagtgaatcggagccggcg 98
>54999_zma-miR168a:pmrd
Length = 104
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 114 gatcccgccttgcatcaactgaatcggagacggcgg 149
|||||||||||||| ||| |||||||||| ||||||
Sbjct: 64 gatcccgccttgcaccaagtgaatcggagccggcgg 99
>46958_ath-miR168b:pmrd
Length = 124
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 24 attcgcttggtgcaggtcgggaac 47
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>54637_sof-miR168b:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 8e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 114 gatcccgccttgcatcaactgaatcggagacggcg 148
|||||||||||||| ||| |||||||||| |||||
Sbjct: 63 gatcccgccttgcaccaagtgaatcggagccggcg 97
>54636_sof-miR168a:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 8e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 114 gatcccgccttgcatcaactgaatcggagacggcg 148
|||||||||||||| ||| |||||||||| |||||
Sbjct: 64 gatcccgccttgcaccaagtgaatcggagccggcg 98
>48349_bna-miR168:pmrd
Length = 133
Score = 46.1 bits (23), Expect = 8e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 9 ttacggtggtctctaattcgcttggtgcaggtcgggaac 47
|||||| || |||| | ||||||||||||||||||||||
Sbjct: 1 ttacggcggcctctgactcgcttggtgcaggtcgggaac 39
>46959_ath-miR168m:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 tcgcttggtgcaggtcgggaacc 48
|||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaacc 23
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 114 gatcccgccttgcatcaactga 135
||||||||||||||||||||||
Sbjct: 83 gatcccgccttgcatcaactga 104
>54375_pts-miR168b:pmrd
Length = 140
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 26 tcgcttggtgcaggtcgggaac 47
||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaac 22
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 114 gatcccgccttgcatcaactga 135
||||||||||||||||||||||
Sbjct: 119 gatcccgccttgcatcaactga 140
>54374_pts-miR168a:pmrd
Length = 118
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 26 tcgcttggtgcaggtcgggaac 47
||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaac 22
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 114 gatcccgccttgcatcaactga 135
||||||||||||||||||||||
Sbjct: 97 gatcccgccttgcatcaactga 118
>54366_ptr-miR168:pmrd
Length = 118
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 26 tcgcttggtgcaggtcgggaac 47
||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaac 22
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 114 gatcccgccttgcatcaactga 135
||||||||||||||||||||||
Sbjct: 97 gatcccgccttgcatcaactga 118
>48649_hte-miR168:pmrd
Length = 140
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 26 tcgcttggtgcaggtcgggaac 47
||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaac 22
>48873_osa-miR168a:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 114 gatcccgccttgcatcaactgaatcggag 142
|||||||||||||| ||| ||||||||||
Sbjct: 56 gatcccgccttgcaccaagtgaatcggag 84
>48872_osa-miR168a:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 114 gatcccgccttgcatcaactgaatcggag 142
|||||||||||||| ||| ||||||||||
Sbjct: 56 gatcccgccttgcaccaagtgaatcggag 84
>48871_osa-miR168a:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 114 gatcccgccttgcatcaactgaatcggag 142
|||||||||||||| ||| ||||||||||
Sbjct: 56 gatcccgccttgcaccaagtgaatcggag 84
>54665_stu-miR168:pmrd
Length = 133
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 26 tcgcttggtgcaggtcggga 45
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 116 tcccgccttgcatcaactga 135
||||||||||||||||||||
Sbjct: 114 tcccgccttgcatcaactga 133
>54546_sly-miR168:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 26 tcgcttggtgcaggtcggga 45
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
