miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa subsp.
pekinensis
Length = 92
Score = 89.7 bits (45), Expect = 9e-18
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 20 tgctggaggcagcggttgatcgatctctttgtgggaaattttggnnnnnnnnnctcaaag 79
||||||||||||||||||||||||||||||||||||| ||||| | ||||
Sbjct: 1 tgctggaggcagcggttgatcgatctctttgtgggaatttttgaaaaacaaaattaaaag 60
Query: 80 catgaacagatcgataaacctctgcatccagc 111
||||||||||||||||||||| ||||||||||
Sbjct: 61 catgaacagatcgataaacctgtgcatccagc 92
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 63.9 bits (32), Expect = 5e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 76 aaagcatgaacagatcgataaacctctgcatccagc 111
|||||||||| |||||||||||||||||||||||||
Sbjct: 53 aaagcatgaatagatcgataaacctctgcatccagc 88
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 21 gctggaggcagcggttgatcgatctctt 48
|||||||||||||||| |||||||||||
Sbjct: 2 gctggaggcagcggttcatcgatctctt 29
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 80 catgaacagatcgataaacctctgcatccagc 111
||||||| ||||||||||||||||||||||||
Sbjct: 60 catgaaccgatcgataaacctctgcatccagc 91
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 22 ctggaggcagcggttgatcgatctctt 48
||||||||||||||| |||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctctt 29
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 79 gcatgaacagatcgataaacctctgcatccagc 111
||||||| ||||||||||||||||||||||||
Sbjct: 64 gcatgaatcgatcgataaacctctgcatccagc 96
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 22 ctggaggcagcggttgatcgatctctt 48
||||||||||||||| |||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctctt 29
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 88 gatcgataaacctctgcatccagc 111
||||||||||||||||||||||||
Sbjct: 68 gatcgataaacctctgcatccagc 91
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 22 ctggaggcagcggttgatcgatctctt 48
||||||||||||||| |||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctctt 29
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 88 gatcgataaacctctgcatccagc 111
||||||||||||||||||||||||
Sbjct: 68 gatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 83 gaacagatcgataaacctctgcatccag 110
|||| |||||||||||||||||||||||
Sbjct: 63 gaaccgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 88 gatcgataaacctctgcatccagc 111
||||||||||||||||||||||||
Sbjct: 109 gatcgataaacctctgcatccagc 132
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 gatcgataaacctctgcatccag 110
|||||||||||||||||||||||
Sbjct: 135 gatcgataaacctctgcatccag 157
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 gatcgataaacctctgcatccag 110
|||||||||||||||||||||||
Sbjct: 136 gatcgataaacctctgcatccag 158
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 tcgataaacctctgcatccagc 111
||||||||||||||||||||||
Sbjct: 69 tcgataaacctctgcatccagc 90
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 tcgataaacctctgcatccagc 111
||||||||||||||||||||||
Sbjct: 67 tcgataaacctctgcatccagc 88
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 tcgataaacctctgcatccagc 111
||||||||||||||||||||||
Sbjct: 112 tcgataaacctctgcatccagc 133
