miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 254 bits (128), Expect = 3e-67
Identities = 138/140 (98%), Gaps = 1/140 (0%)
Strand = Plus / Plus
Query: 2 ctgtttgcggatggagcatcatcaagattcacaagtattgagactcagtgcgtggtggtg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgtttgcggatggagcatcatcaagattcacaagtattgagactcagtgcgtggtggtg 60
Query: 62 atggtgacttttgtggtcccttcc-acactccgatggctctttgatatgggaatcttgat 120
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 61 atggtgacttttgtggtcccttcctacactccgatggctctttgatgtgggaatcttgat 120
Query: 121 gatgctgcagcggcaataaa 140
||||||||||||||||||||
Sbjct: 121 gatgctgcagcggcaataaa 140
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 81.8 bits (41), Expect = 2e-15
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 100 ctttgatatgggaatcttgatgatgctgcagcggcaataaa 140
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 ctttgatatgggaatcttgatgatgctgcagcggcaataaa 156
Score = 60.0 bits (30), Expect = 8e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 2 ctgtttgcggatggagcatcatcaagattcacaa 35
|||||||| |||||||||||||||||||||||||
Sbjct: 1 ctgtttgctgatggagcatcatcaagattcacaa 34
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya (papaya)
Length = 201
Score = 71.9 bits (36), Expect = 2e-12
Identities = 43/44 (97%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 98 ctctttgat-atgggaatcttgatgatgctgcagcggcaataaa 140
||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 158 ctctttgattatgggaatcttgatgatgctgcagcggcaataaa 201
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 2 ctgtttgcggatggagcatcatcaagattcacaa 35
||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgtttgcggatggagcatcatcaagattcacaa 34
>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
trichocarpa
Length = 144
Score = 71.9 bits (36), Expect = 2e-12
Identities = 121/145 (83%), Gaps = 7/145 (4%)
Strand = Plus / Plus
Query: 2 ctgtttgcggatggagcatcatcaagattcacaag---tattgagactcagtgcgtggtg 58
|||||||| ||||||||||||||||||||||||| |||| | || |||| ||||||
Sbjct: 1 ctgtttgcctatggagcatcatcaagattcacaagctttattagggct-agtgtgtggtg 59
Query: 59 gtgatggtgacttttg-tggtcccttcca--cactccgatggctctttgatatgggaatc 115
|||||||| |||||| ||||||||| || ||| || || |||||| ||||||||
Sbjct: 60 atgatggtggcttttggtggtccctttttttcaatccaatagccctttgaattgggaatc 119
Query: 116 ttgatgatgctgcagcggcaataaa 140
|||||||||||||||||||||||||
Sbjct: 120 ttgatgatgctgcagcggcaataaa 144
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 3 tgtttgcggatggagcatcatcaagattcaca 34
||||||||| ||||||||||||||||||||||
Sbjct: 2 tgtttgcgggtggagcatcatcaagattcaca 33
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 111 gaatcttgatgatgctgcagcggcaataaa 140
||||||||||||||||||| ||||||||||
Sbjct: 112 gaatcttgatgatgctgcatcggcaataaa 141
>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
cress)
Length = 113
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 111 gaatcttgatgatgctgcagcggcaat 137
|||||||||||||||||||||||||||
Sbjct: 84 gaatcttgatgatgctgcagcggcaat 110
>RF00452;mir-172;AY728437.1/1-132 3694:Populus trichocarpa
Length = 132
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 108 tgggaatcttgatgatgctgcagcggc 134
|||||||||||||||||||||||||||
Sbjct: 106 tgggaatcttgatgatgctgcagcggc 132
>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
Length = 183
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 106 tatgggaatcttgatgatgctgcagcggcaa 136
|||||||||||||||||||||||| ||||||
Sbjct: 149 tatgggaatcttgatgatgctgcatcggcaa 179
>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
Length = 134
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 107 atgggaatcttgatgatgctgcagcggcaa 136
||||||||||||||||||||||| ||||||
Sbjct: 101 atgggaatcttgatgatgctgcatcggcaa 130
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 111 gaatcttgatgatgctgcagcggcaataaa 140
||||||||||||||||||| ||||||||||
Sbjct: 133 gaatcttgatgatgctgcatcggcaataaa 162
>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
Length = 127
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 3 tgtttgcggatggagcatcatcaagattcacaag 36
||||||| | ||||||||||||||||||||||||
Sbjct: 2 tgtttgctggtggagcatcatcaagattcacaag 35
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 97 gctctttgatatgggaatcttgatgatgctgcag 130
|||||||||| || ||||||||||||||||||||
Sbjct: 89 gctctttgatttgagaatcttgatgatgctgcag 122
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 111 gaatcttgatgatgctgcagcggcaataaa 140
||||||||||||||||||| ||||||||||
Sbjct: 83 gaatcttgatgatgctgcatcggcaataaa 112
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 3 tgtttgcggatggagcatcatcaagattcaca 34
|||||||| ||| |||||||||||||||||||
Sbjct: 2 tgtttgcgcatgtagcatcatcaagattcaca 33
>RF00452;mir-172;CAAP02002749.1/38930-38796 29760:Vitis vinifera
Length = 135
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 100 ctttgatatgggaatcttgatgatgctgca 129
|||| |||||||||||||||||||||||||
Sbjct: 95 ctttcatatgggaatcttgatgatgctgca 124
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 3 tgtttgcggatggagcatcatcaagattcacaa 35
|||||||||||| |||||||| |||||||||||
Sbjct: 2 tgtttgcggatgcagcatcatgaagattcacaa 34
>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana (thale
cress)
Length = 123
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 106 tatgggaatcttgatgatgctgcagcggcaat 137
|||| ||||||||||||||||||||| |||||
Sbjct: 89 tatgagaatcttgatgatgctgcagctgcaat 120
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 tggagcatcatcaagattcacaa 35
|||||||||||||||||||||||
Sbjct: 12 tggagcatcatcaagattcacaa 34
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 3 tgtttgcggatggagcatcatcaagattcaca 34
||||||||| || |||||||||||||||||||
Sbjct: 2 tgtttgcgggtgtagcatcatcaagattcaca 33
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 111 gaatcttgatgatgctgcagcggcaataaa 140
||||||||||||||||||| | ||||||||
Sbjct: 130 gaatcttgatgatgctgcatcagcaataaa 159
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 111 gaatcttgatgatgctgcagcggcaata 138
||||||||||||||||||| ||||||||
Sbjct: 92 gaatcttgatgatgctgcatcggcaata 119
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 111 gaatcttgatgatgctgcagcggcaata 138
||||||||||||||||||| ||||||||
Sbjct: 91 gaatcttgatgatgctgcatcggcaata 118
>RF00452;mir-172;ABIM01015449.1/13104-12974 3649:Carica papaya
(papaya)
Length = 131
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 107 atgggaatcttgatgatgctgca 129
|||||||||||||||||||||||
Sbjct: 98 atgggaatcttgatgatgctgca 120
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 111 gaatcttgatgatgctgcagcggcaat 137
||||||||||||||||||| |||||||
Sbjct: 87 gaatcttgatgatgctgcatcggcaat 113
>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
(papaya)
Length = 173
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 111 gaatcttgatgatgctgcagcggcaataaa 140
||||||||||||||||||| |||| |||||
Sbjct: 144 gaatcttgatgatgctgcatcggccataaa 173
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 108 tgggaatcttgatgatgctgca 129
||||||||||||||||||||||
Sbjct: 65 tgggaatcttgatgatgctgca 86
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 108 tgggaatcttgatgatgctgca 129
||||||||||||||||||||||
Sbjct: 93 tgggaatcttgatgatgctgca 114
>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
Length = 90
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 111 gaatcttgatgatgctgcagcggcaataaa 140
||||||||||||||||||| | ||||||||
Sbjct: 61 gaatcttgatgatgctgcatcagcaataaa 90
>RF00452;mir-172;AC165172.2/39243-39397 4577:Zea mays
Length = 155
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 108 tgggaatcttgatgatgctgca 129
||||||||||||||||||||||
Sbjct: 123 tgggaatcttgatgatgctgca 144
>RF00452;mir-172;EU974220.1/371-523 4577:Zea mays
Length = 153
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 108 tgggaatcttgatgatgctgca 129
||||||||||||||||||||||
Sbjct: 121 tgggaatcttgatgatgctgca 142
>RF00452;mir-172;ABXC01002369.1/66790-66601 4558:Sorghum bicolor
(sorghum)
Length = 190
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 108 tgggaatcttgatgatgctgca 129
||||||||||||||||||||||
Sbjct: 158 tgggaatcttgatgatgctgca 179
>RF00452;mir-172;AP003298.3/17210-16973 39947:Oryza sativa Japonica
Group
Length = 238
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 108 tgggaatcttgatgatgctgca 129
||||||||||||||||||||||
Sbjct: 206 tgggaatcttgatgatgctgca 227
