miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00688;MIR394;AM428484.2/52366-52463 29760:Vitis vinifera
Length = 98
Score = 194 bits (98), Expect = 2e-49
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 30 ctcacagagtttattggcattctgtccacctcccatctcttgaaaatctctcttttctct 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcacagagtttattggcattctgtccacctcccatctcttgaaaatctctcttttctct 60
Query: 90 ctgtggaggtgggcatactgccaaccaagctctgttgg 127
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgtggaggtgggcatactgccaaccaagctctgttgg 98
>RF00688;MIR394;AARH01002882.1/31556-31654 3694:Populus trichocarpa
Length = 99
Score = 63.9 bits (32), Expect = 6e-10
Identities = 81/96 (84%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 33 acagagtttattggcattctgtccacctcccatctcttgaaaatctctcttttctctc-t 91
|||||||||||||||||||||||||||||| |||| | |||| | | ||| || |
Sbjct: 4 acagagtttattggcattctgtccacctcctatctttagaaattagaatatctctttcat 63
Query: 92 gtggaggtgggcatactgccaaccaagctctgttgg 127
||||||||||||||||||||||| |||||||||||
Sbjct: 64 atggaggtgggcatactgccaaccgagctctgttgg 99
>RF00688;MIR394;DQ908352.1/346-226 3635:Gossypium hirsutum (upland
cotton)
Length = 121
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 33 acagagtttattggcattctgtccacctcc 62
||||||||||||||||||||||||||||||
Sbjct: 4 acagagtttattggcattctgtccacctcc 33
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 93 tggaggtgggcatactgccaaccaagctctgttgg 127
|||||||||||| ||||||||| |||||||||||
Sbjct: 87 tggaggtgggcaaactgccaactgagctctgttgg 121
>RF00688;MIR394;ABIM01007450.1/10865-10745 3649:Carica papaya
(papaya)
Length = 121
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 33 acagagtttattggcattctgtccacctcc 62
||||||||||||||||||||||||||||||
Sbjct: 4 acagagtttattggcattctgtccacctcc 33
>RF00688;MIR394;AARH01001039.1/148774-148676 3694:Populus
trichocarpa
Length = 99
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 93 tggaggtgggcatactgccaaccaagctctgttgg 127
|||||||||||||||||||||| |||||||||||
Sbjct: 65 tggaggtgggcatactgccaactgagctctgttgg 99
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 33 acagagtttattggcattctgtccacctcc 62
||||||||| ||||||||||||||||||||
Sbjct: 4 acagagttttttggcattctgtccacctcc 33
>RF00688;MIR394;AASG02000377.1/56114-56246 3988:Ricinus communis
(castor bean)
Length = 133
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 93 tggaggtgggcatactgccaaccaagctctgttgg 127
|||||||||||||||||||||| |||||||||||
Sbjct: 99 tggaggtgggcatactgccaactgagctctgttgg 133
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 33 acagagtttattggcattctgtccacctcc 62
|||||| |||||||||||||||||||||||
Sbjct: 4 acagagcttattggcattctgtccacctcc 33
>RF00688;MIR394;AC189318.1/31773-31892 51351:Brassica rapa subsp.
pekinensis
Length = 120
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 33 acagagtttattggcattctgtccacctcc 62
|||||||| ||||||||||||||||||||
Sbjct: 4 acagagttctttggcattctgtccacctcc 33
>RF00688;MIR394;BABK01003371.1/1268-1359 34305:Lotus japonicus
Length = 92
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 94 ggaggtgggcatactgccaaccaagctctgttgg 127
|||||||| |||||||||||| |||||||||||
Sbjct: 59 ggaggtggccatactgccaacacagctctgttgg 92
