miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;ABRQ01038381.1/1702-1622 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 133 bits (67), Expect = 4e-31
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 10 ctgggtccatcttccagtacagtgttggatggtctaattgtgaagctcctaacactgtct 69
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ctgggcccatcttccagcacagtgttggatggtctaattgtgaagctcctaacactgtct 62
Query: 70 ggtaaagatggcccccggg 88
|||||||||||||| ||||
Sbjct: 63 ggtaaagatggccctcggg 81
>RF00241;mir-8;AAHX01032846.1/18098-18178 10116:Rattus norvegicus
(Norway rat)
Length = 81
Score = 101 bits (51), Expect = 2e-21
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 14 gtccatcttccagtacagtgttggatggtctaattgtgaagctcctaacactgtctggta 73
|||||||||||||| |||||||||||||| || | |||||||||||||||||||||||
Sbjct: 7 gtccatcttccagtgcagtgttggatggttgaagtacgaagctcctaacactgtctggta 66
Query: 74 aagatggcccccggg 88
|||||||||||||||
Sbjct: 67 aagatggcccccggg 81
>RF00241;mir-8;AAFR03037717.1/783-855 13616:Monodelphis domestica
(gray short-tailed opossum)
Length = 73
Score = 60.0 bits (30), Expect = 5e-09
Identities = 66/79 (83%), Gaps = 8/79 (10%)
Strand = Plus / Plus
Query: 10 ctgggtccatcttccagtacagtgttggatggtctaattgtgaagctcctaacactgtct 69
||||| |||||||||||||||||| |||||||| |||||| ||||||||||||
Sbjct: 3 ctggggccatcttccagtacagtggtggatggt--------gaagcttctaacactgtct 54
Query: 70 ggtaaagatggcccccggg 88
|||||||||| || |||||
Sbjct: 55 ggtaaagatgccctccggg 73
