miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00683;mir-143;AC148011.3/33883-33988 10090:Mus musculus (house
mouse)
Length = 106
Score = 168 bits (85), Expect = 9e-42
Identities = 94/97 (96%)
Strand = Plus / Plus
Query: 10 cctgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaa 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 cctgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaa 69
Query: 70 gcactgtagctcaggaagagagaagttgttctgcagc 106
|||||||||||||||||| |||||| ||| |||||||
Sbjct: 70 gcactgtagctcaggaagggagaagatgtcctgcagc 106
>RF00683;mir-143;AAPE01221912.1/1898-1793 59463:Myotis lucifugus
(little brown bat)
Length = 106
Score = 167 bits (84), Expect = 4e-41
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 12 tgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagc 71
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tgtctcccagcttgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagc 71
Query: 72 actgtagctcaggaagagagaagttgttctgc 103
|||||||||||||||| |||||||||||||||
Sbjct: 72 actgtagctcaggaagggagaagttgttctgc 103
>RF00683;mir-143;AAGW01160071.1/967-862 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 165 bits (83), Expect = 1e-40
Identities = 92/95 (96%)
Strand = Plus / Plus
Query: 12 tgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagc 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagc 71
Query: 72 actgtagctcaggaagagagaagttgttctgcagc 106
|||||||||| ||||| ||||||||||||| ||||
Sbjct: 72 actgtagctcgggaagggagaagttgttctccagc 106
>RF00683;mir-143;AAIY01705731.1/1779-1674 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 106
Score = 165 bits (83), Expect = 1e-40
Identities = 92/95 (96%)
Strand = Plus / Plus
Query: 6 gcgccctgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgaga 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 gcgccctgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgaga 65
Query: 66 tgaagcactgtagctcaggaagagagaagttgttc 100
|||||||||||||||| ||||| |||| |||||||
Sbjct: 66 tgaagcactgtagctcgggaagggagaggttgttc 100
>RF00683;mir-143;AALT01067568.1/1202-1307 42254:Sorex araneus
(European shrew)
Length = 106
Score = 131 bits (66), Expect = 2e-30
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 10 cctgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaa 69
|||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 10 cctgtctcccggcctggggtgcagtgctgcatctctggtcagctgggagtctgagatgaa 69
Query: 70 gcactgtagctcaggaag 87
||||||||||||||||||
Sbjct: 70 gcactgtagctcaggaag 87
>RF00683;mir-143;AAFR03012464.1/24867-24972 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 106
Score = 129 bits (65), Expect = 8e-30
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 11 ctgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaag 70
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 11 ctgtctcccagcccgaggtgcagtgctgcatctctggtcagttgtgagtctgagatgaag 70
Query: 71 cactgtagctcaggaag 87
||||||||||| |||||
Sbjct: 71 cactgtagctcgggaag 87
>RF00683;mir-143;AAPN01425211.1/1518-1413 9258:Ornithorhynchus
anatinus (platypus)
Length = 106
Score = 119 bits (60), Expect = 8e-27
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 12 tgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagc 71
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 12 tgtctcccagcccaaggtgcagtgctgcatctctggtcagttgtgagtctgagatgaagc 71
Query: 72 actgtagctcaggaag 87
|||||||||| |||||
Sbjct: 72 actgtagctcgggaag 87
>RF00683;mir-143;AAWZ01000591.1/16242-16347 28377:Anolis
carolinensis (green anole)
Length = 106
Score = 119 bits (60), Expect = 8e-27
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 12 tgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagc 71
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 12 tgtctcccagcccaaggtgcagtgctgcatctctggtcagttgtgagtctgagatgaagc 71
Query: 72 actgtagctcaggaag 87
|||||||||| |||||
Sbjct: 72 actgtagctcgggaag 87
>RF00683;mir-143;CAAB01002152.1/24278-24172 31033:Takifugu
rubripes
Length = 107
Score = 101 bits (51), Expect = 2e-21
Identities = 54/55 (98%)
Strand = Plus / Plus
Query: 27 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttggtagtctgagatgaagcactgtagctc 81
>RF00683;mir-143;ABPL01011624.1/1446-1341 27751:Melanochromis
auratus
Length = 106
Score = 101 bits (51), Expect = 2e-21
Identities = 54/55 (98%)
Strand = Plus / Plus
Query: 27 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttggtagtctgagatgaagcactgtagctc 81
>RF00683;mir-143;AANH01007327.1/1417-1521 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 105
Score = 101 bits (51), Expect = 2e-21
Identities = 54/55 (98%)
Strand = Plus / Plus
Query: 27 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttggtagtctgagatgaagcactgtagctc 81
>RF00683;mir-143;AAVX01064725.1/2024-2127 7868:Callorhinchus milii
(ghost shark)
Length = 104
Score = 101 bits (51), Expect = 2e-21
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 19 cagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtag 78
||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 19 cagccagaggtgcagtgctgcatctctggttagttgtgagtctgagatgaagcactgtag 78
Query: 79 ctc 81
|||
Sbjct: 79 ctc 81
>RF00683;mir-143;CU234179.11/36731-36626 7955:Danio rerio
(zebrafish)
Length = 106
Score = 93.7 bits (47), Expect = 4e-19
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 27 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctc 81
>RF00683;mir-143;BAAE01019938.1/1252-1147 8090:Oryzias latipes
(Japanese medaka)
Length = 106
Score = 93.7 bits (47), Expect = 4e-19
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 27 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
|||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttgatagtctgagatgaagcactgtagctc 81
