miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28465_hsa-mir-145:mirbase
Length = 88
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 caccttgtcctcacggtccagttttcccaggaatcccttagatgctaagatggggattcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caccttgtcctcacggtccagttttcccaggaatcccttagatgctaagatggggattcc 60
Query: 61 tggaaatactgttcttgaggtcatggtt 88
||||||||||||||||||||||||||||
Sbjct: 61 tggaaatactgttcttgaggtcatggtt 88
>30237_ptr-mir-145:mirbase
Length = 88
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 caccttgtcctcacggtccagttttcccaggaatcccttagatgctaagatggggattcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caccttgtcctcacggtccagttttcccaggaatcccttagatgctaagatggggattcc 60
Query: 61 tggaaatactgttcttgaggtcatggtt 88
||||||||||||||||||||||||||||
Sbjct: 61 tggaaatactgttcttgaggtcatggtt 88
>30849_ppy-mir-145:mirbase
Length = 88
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 caccttgtcctcacggtccagttttcccaggaatcccttagatgctaagatggggattcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caccttgtcctcacggtccagttttcccaggaatcccttagatgctaagatggggattcc 60
Query: 61 tggaaatactgttcttgaggtcatggtt 88
||||||||||||||||||||||||||||
Sbjct: 61 tggaaatactgttcttgaggtcatggtt 88
>33231_bta-mir-145:mirbase
Length = 88
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 caccttgtcctcacggtccagttttcccaggaatcccttagatgctaagatggggattcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caccttgtcctcacggtccagttttcccaggaatcccttagatgctaagatggggattcc 60
Query: 61 tggaaatactgttcttgaggtcatggtt 88
||||||||||||||||||||||||||||
Sbjct: 61 tggaaatactgttcttgaggtcatggtt 88
>27750_mml-mir-145:mirbase
Length = 88
Score = 167 bits (84), Expect = 2e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 1 caccttgtcctcacggtccagttttcccaggaatcccttagatgctaagatggggattcc 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 caccttgtcctcacggtccagttttcccaggaatcccttaaatgctaagatggggattcc 60
Query: 61 tggaaatactgttcttgaggtcatggtt 88
||||||||||||||||||||||||||||
Sbjct: 61 tggaaatactgttcttgaggtcatggtt 88
>28216_mne-mir-145:mirbase
Length = 88
Score = 167 bits (84), Expect = 2e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 1 caccttgtcctcacggtccagttttcccaggaatcccttagatgctaagatggggattcc 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 caccttgtcctcacggtccagttttcccaggaatcccttaaatgctaagatggggattcc 60
Query: 61 tggaaatactgttcttgaggtcatggtt 88
||||||||||||||||||||||||||||
Sbjct: 61 tggaaatactgttcttgaggtcatggtt 88
>26719_cfa-mir-145:mirbase
Length = 83
Score = 165 bits (83), Expect = 6e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 6 tgtcctcacggtccagttttcccaggaatcccttagatgctaagatggggattcctggaa 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtcctcacggtccagttttcccaggaatcccttagatgctaagatggggattcctggaa 60
Query: 66 atactgttcttgaggtcatggtt 88
|||||||||||||||||||||||
Sbjct: 61 atactgttcttgaggtcatggtt 83
>32751_rno-mir-145:mirbase
Length = 88
Score = 163 bits (82), Expect = 3e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 caccttgtcctcacggtccagttttcccaggaatcccttagatgctaagatggggattcc 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 caccttgtcctcacggtccagttttcccaggaatcccttggatgctaagatggggattcc 60
Query: 61 tggaaatactgttcttgaggtcatgg 86
||||||||||||||||||||||||||
Sbjct: 61 tggaaatactgttcttgaggtcatgg 86
>33995_ssc-mir-145:mirbase
Length = 86
Score = 163 bits (82), Expect = 3e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 caccttgtcctcacggtccagttttcccaggaatcccttagatgctaagatggggattcc 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 caccttgtcctcacggtccagttttcccaggaatcccttagatgctgagatggggattcc 60
Query: 61 tggaaatactgttcttgaggtcatgg 86
||||||||||||||||||||||||||
Sbjct: 61 tggaaatactgttcttgaggtcatgg 86
>27045_eca-mir-145:mirbase
Length = 70
Score = 139 bits (70), Expect = 4e-34
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 10 ctcacggtccagttttcccaggaatcccttagatgctaagatggggattcctggaaatac 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcacggtccagttttcccaggaatcccttagatgctaagatggggattcctggaaatac 60
Query: 70 tgttcttgag 79
||||||||||
Sbjct: 61 tgttcttgag 70
>27393_mdo-mir-145:mirbase
Length = 70
Score = 131 bits (66), Expect = 9e-32
Identities = 69/70 (98%)
Strand = Plus / Plus
Query: 10 ctcacggtccagttttcccaggaatcccttagatgctaagatggggattcctggaaatac 69
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcagggtccagttttcccaggaatcccttagatgctaagatggggattcctggaaatac 60
Query: 70 tgttcttgag 79
||||||||||
Sbjct: 61 tgttcttgag 70
>31878_mmu-mir-145:mirbase
Length = 70
Score = 131 bits (66), Expect = 9e-32
Identities = 69/70 (98%)
Strand = Plus / Plus
Query: 10 ctcacggtccagttttcccaggaatcccttagatgctaagatggggattcctggaaatac 69
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 ctcacggtccagttttcccaggaatcccttggatgctaagatggggattcctggaaatac 60
Query: 70 tgttcttgag 79
||||||||||
Sbjct: 61 tgttcttgag 70
>31502_oan-mir-145:mirbase
Length = 98
Score = 95.6 bits (48), Expect = 5e-21
Identities = 67/72 (93%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 15 ggtccagttttcccaggaatcccttagatgctaagatggggattcctggaaatactgttc 74
|||||||||||||||||||| | | || |||| |||||||||||||||||||||||||||
Sbjct: 17 ggtccagttttcccaggaatacat-aggtgctgagatggggattcctggaaatactgttc 75
Query: 75 ttgaggtcatgg 86
||||||||||||
Sbjct: 76 ttgaggtcatgg 87
>25794_xtr-mir-145:mirbase
Length = 86
Score = 91.7 bits (46), Expect = 8e-20
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 8 tcctcacggtccagttttcccaggaatcccttagatgctaagatggggattcctggaaat 67
|||||| ||||||||||||||||||||||||| | |||| | |||||||||||||||||
Sbjct: 7 tcctcaaggtccagttttcccaggaatcccttgggtgctgtggtggggattcctggaaat 66
Query: 68 actgttcttg 77
||||||||||
Sbjct: 67 actgttcttg 76
>34317_dre-mir-145:mirbase
Length = 113
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 ggggattcctggaaatactgttcttg 77
||||||||||||||||||||||||||
Sbjct: 67 ggggattcctggaaatactgttcttg 92
>25496_pma-mir-145:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ggtccagttttcccaggaatccct 38
||||||||||||||||||||||||
Sbjct: 12 ggtccagttttcccaggaatccct 35
