miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28494_hsa-mir-187:mirbase
Length = 109
Score = 216 bits (109), Expect = 3e-57
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 1 ggtcgggctcaccatgacacagtgtgagacctcgggctacaacacaggacccgggcgctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtcgggctcaccatgacacagtgtgagacctcgggctacaacacaggacccgggcgctg 60
Query: 61 ctctgacccctcgtgtcttgtgttgcagccggagggacgcaggtccgca 109
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctctgacccctcgtgtcttgtgttgcagccggagggacgcaggtccgca 109
>30108_ppa-mir-187:mirbase
Length = 109
Score = 216 bits (109), Expect = 3e-57
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 1 ggtcgggctcaccatgacacagtgtgagacctcgggctacaacacaggacccgggcgctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtcgggctcaccatgacacagtgtgagacctcgggctacaacacaggacccgggcgctg 60
Query: 61 ctctgacccctcgtgtcttgtgttgcagccggagggacgcaggtccgca 109
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctctgacccctcgtgtcttgtgttgcagccggagggacgcaggtccgca 109
>30876_ppy-mir-187:mirbase
Length = 109
Score = 200 bits (101), Expect = 1e-52
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 5 gggctcaccatgacacagtgtgagacctcgggctacaacacaggacccgggcgctgctct 64
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5 gggctcaccatgacacagtgtgagacctcgggctacaacataggacccgggcgctgctct 64
Query: 65 gacccctcgtgtcttgtgttgcagccggagggacgcaggtccgca 109
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 gacccctcgtgtcttgtgttgcagccggagggacgcaggtccgca 109
>27778_mml-mir-187:mirbase
Length = 109
Score = 192 bits (97), Expect = 4e-50
Identities = 106/109 (97%)
Strand = Plus / Plus
Query: 1 ggtcgggctcaccatgacacagtgtgagacctcgggctacaacacaggacccgggcgctg 60
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 ggtcaggctcactatgacacagtgtgagacctcgggctacaacacaggacccgggtgctg 60
Query: 61 ctctgacccctcgtgtcttgtgttgcagccggagggacgcaggtccgca 109
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctctgacccctcgtgtcttgtgttgcagccggagggacgcaggtccgca 109
>28226_mne-mir-187:mirbase
Length = 109
Score = 192 bits (97), Expect = 4e-50
Identities = 106/109 (97%)
Strand = Plus / Plus
Query: 1 ggtcgggctcaccatgacacagtgtgagacctcgggctacaacacaggacccgggcgctg 60
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 ggtcaggctcactatgacacagtgtgagacctcgggctacaacacaggacccgggtgctg 60
Query: 61 ctctgacccctcgtgtcttgtgttgcagccggagggacgcaggtccgca 109
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctctgacccctcgtgtcttgtgttgcagccggagggacgcaggtccgca 109
>33255_bta-mir-187:mirbase
Length = 109
Score = 163 bits (82), Expect = 3e-41
Identities = 100/106 (94%)
Strand = Plus / Plus
Query: 4 cgggctcaccatgacacagtgtgagacctcgggctacaacacaggacccgggcgctgctc 63
||||||| ||| ||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4 cgggctccccacgacacggtgtgagacctcgggctacaacacgggacccgggcgctgctc 63
Query: 64 tgacccctcgtgtcttgtgttgcagccggagggacgcaggtccgca 109
||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 64 cgacccctcgtgtcttgtgttgcagccggagggacgcaagtccgca 109
>32773_rno-mir-187:mirbase
Length = 104
Score = 143 bits (72), Expect = 3e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 30 cctcgggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagc 89
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25 cctcaggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagc 84
Query: 90 cggagggacgcaggtc 105
||||||||||||||||
Sbjct: 85 cggagggacgcaggtc 100
>34017_ssc-mir-187:mirbase
Length = 78
Score = 139 bits (70), Expect = 5e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 25 tgagacctcgggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgtt 84
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 1 tgagacctcgggctacaacacgggactcgggcgctgctctgacccctcgtgtcttgtgtt 60
Query: 85 gcagccggagggacgcag 102
||||||||||||||||||
Sbjct: 61 gcagccggagggacgcag 78
>26742_cfa-mir-187:mirbase
Length = 68
Score = 119 bits (60), Expect = 4e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 31 ctcgggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagcc 90
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 ctcgggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagcc 60
Query: 91 ggagggac 98
||||||||
Sbjct: 61 ggagggac 68
>31903_mmu-mir-187:mirbase
Length = 61
Score = 115 bits (58), Expect = 7e-27
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 35 ggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagccgg 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagccgg 61
>27067_eca-mir-187:mirbase
Length = 61
Score = 105 bits (53), Expect = 7e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 32 tcgggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagccg 91
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 tcgggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagccg 60
Query: 92 g 92
|
Sbjct: 61 g 61
>27410_mdo-mir-187:mirbase
Length = 81
Score = 91.7 bits (46), Expect = 1e-19
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 23 tgtgagacctcgggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtg 82
||||||||||| |||||||||||||||| |||| ||| ||||| |||||||||||||||
Sbjct: 3 tgtgagacctctggctacaacacaggacacgggagcttttctgaaccctcgtgtcttgtg 62
Query: 83 ttgcagccggaggg 96
|||||||| |||||
Sbjct: 63 ttgcagccagaggg 76
>25980_gga-mir-187:mirbase
Length = 86
Score = 83.8 bits (42), Expect = 2e-17
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 23 tgtgagacctcgggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtg 82
||||||||||| |||||||||||||||| ||| ||| ||||| |||||||||||||||
Sbjct: 8 tgtgagacctccggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtg 67
Query: 83 ttgcagccggaggg 96
|||||||| |||||
Sbjct: 68 ttgcagccagaggg 81
>26488_tgu-mir-187:mirbase
Length = 70
Score = 67.9 bits (34), Expect = 1e-12
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 35 ggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagccggag 94
|||||||||||||||| ||| ||| ||||| ||||||||||||||||||||||| |||
Sbjct: 5 ggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagccagag 64
Query: 95 gg 96
||
Sbjct: 65 gg 66
>31517_oan-mir-187:mirbase
Length = 79
Score = 65.9 bits (33), Expect = 6e-12
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 23 tgtgagacctcgggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtg 82
||||||||||| |||||||||| ||||| | || ||| || || |||||||||||||||
Sbjct: 1 tgtgagacctccggctacaacagaggacacaggagcttttcagaaccctcgtgtcttgtg 60
Query: 83 ttgcagccggagg 95
|||||||| ||||
Sbjct: 61 ttgcagccagagg 73
>25810_xtr-mir-187:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 68 ccctcgtgtcttgtgttgcagcc 90
|||||||||||||||||||||||
Sbjct: 47 ccctcgtgtcttgtgttgcagcc 69
>34337_dre-mir-187:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 ctcgtgtcttgtgttgcagcc 90
|||||||||||||||||||||
Sbjct: 60 ctcgtgtcttgtgttgcagcc 80
>34617_fru-mir-187:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 ctcgtgtcttgtgttgcagcc 90
|||||||||||||||||||||
Sbjct: 62 ctcgtgtcttgtgttgcagcc 82
>34764_tni-mir-187:mirbase
Length = 65
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 ctcgtgtcttgtgttgcagcc 90
|||||||||||||||||||||
Sbjct: 40 ctcgtgtcttgtgttgcagcc 60
