miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00254;mir-16;AAKN02044430.1/75518-75594 10141:Cavia porcellus
(domestic guinea pig)
Length = 77
Score = 113 bits (57), Expect = 4e-25
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 10 ggctctagcagcacagaaatattggcacagggaagcgagtctgccaatattggctgtgct 69
|||| ||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||
Sbjct: 5 ggctttagcagcacagaaatattggcactgggaagcaagtctgccaatattggttgtgct 64
Query: 70 gctccaggcaggg 82
|||||||||||||
Sbjct: 65 gctccaggcaggg 77
>RF00254;mir-16;ABRO01159172.1/3627-3550 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 78
Score = 107 bits (54), Expect = 2e-23
Identities = 70/74 (94%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 10 ggctctagcagcacagaaatattggcacaggg-aagcgagtctgccaatattggctgtgc 68
|||||||||||||||||||||||||||| ||| || | ||||||||||||||||||||||
Sbjct: 5 ggctctagcagcacagaaatattggcactggggaaacaagtctgccaatattggctgtgc 64
Query: 69 tgctccaggcaggg 82
||||||||||||||
Sbjct: 65 tgctccaggcaggg 78
>RF00254;mir-16;AAGU02565633.1/508-432 9785:Loxodonta africana
(African savanna elephant)
Length = 77
Score = 97.6 bits (49), Expect = 2e-20
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 10 ggctctagcagcacagaaatattggcacagggaagcgagtctgccaatattggctgtgct 69
|||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||
Sbjct: 5 ggctctagcagcacagaaatattggcaccgggagaagagtctaccaatattggctgtgct 64
Query: 70 gctccaggcaggg 82
||| |||||||||
Sbjct: 65 gctgcaggcaggg 77
>RF00254;mir-16;AAPE01106267.1/132-58 59463:Myotis lucifugus
(little brown bat)
Length = 75
Score = 87.7 bits (44), Expect = 2e-17
Identities = 62/67 (92%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 10 ggctctagcagcacagaaatattggcacagggaagcgagtctgccaatattggctgtgct 69
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||
Sbjct: 5 ggctctagcagcacagaaatattggcactgggaa--gagtctgccaatatgggctgagct 62
Query: 70 gctccag 76
|||||||
Sbjct: 63 gctccag 69
>RF00254;mir-16;AALT01598296.1/524-600 42254:Sorex araneus
(European shrew)
Length = 77
Score = 67.9 bits (34), Expect = 2e-11
Identities = 66/74 (89%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 10 ggctctagcagcacagaaatattgg-cacagggaagcgagtctgccaatattggctgtgc 68
||||||||||||||||||||||||| ||| ||| | || |||||||||||| ||||||
Sbjct: 5 ggctctagcagcacagaaatattgggcactggggaa-gaatctgccaatattaactgtgc 63
Query: 69 tgctccaggcaggg 82
||||||||||||||
Sbjct: 64 tgctccaggcaggg 77
