miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST 


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>28511_hsa-mir-198:mirbase
          Length = 62

 Score =  123 bits (62), Expect = 1e-29
 Identities = 62/62 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcattggtccagaggggagataggttcctgtgatttttccttcttctctatagaataaat 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tcattggtccagaggggagataggttcctgtgatttttccttcttctctatagaataaat 60

            
Query: 61 ga 62
          ||
Sbjct: 61 ga 62





>30114_ppa-mir-198:mirbase
          Length = 62

 Score =  115 bits (58), Expect = 3e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcattggtccagaggggagataggttcctgtgatttttccttcttctctatagaataaat 60
          ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1  tcattggtccagaggggagataggttcctgtgatttttccttcttctctgtagaataaat 60

            
Query: 61 ga 62
          ||
Sbjct: 61 ga 62





>30275_ptr-mir-198:mirbase
          Length = 62

 Score =  115 bits (58), Expect = 3e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcattggtccagaggggagataggttcctgtgatttttccttcttctctatagaataaat 60
          ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1  tcattggtccagaggggagataggttcctgtgatttttccttcttctctgtagaataaat 60

            
Query: 61 ga 62
          ||
Sbjct: 61 ga 62





>30891_ppy-mir-198:mirbase
          Length = 62

 Score =  115 bits (58), Expect = 3e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcattggtccagaggggagataggttcctgtgatttttccttcttctctatagaataaat 60
          ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1  tcattggtccagaggggagataggttcctgtgatttttccttcttctctgtagaataaat 60

            
Query: 61 ga 62
          ||
Sbjct: 61 ga 62





>27794_mml-mir-198:mirbase
          Length = 62

 Score =  107 bits (54), Expect = 8e-25
 Identities = 60/62 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcattggtccagaggggagataggttcctgtgatttttccttcttctctatagaataaat 60
          |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1  tcattggtccagaggggaaataggttcctgtgatttttccttcttctctgtagaataaat 60

            
Query: 61 ga 62
          ||
Sbjct: 61 ga 62





>28230_mne-mir-198:mirbase
          Length = 62

 Score =  107 bits (54), Expect = 8e-25
 Identities = 60/62 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcattggtccagaggggagataggttcctgtgatttttccttcttctctatagaataaat 60
          |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1  tcattggtccagaggggaaataggttcctgtgatttttccttcttctctgtagaataaat 60

            
Query: 61 ga 62
          ||
Sbjct: 61 ga 62





>27517_age-mir-198:mirbase
          Length = 62

 Score = 83.8 bits (42), Expect = 1e-17
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                    
Query: 5  tggtccagaggggagataggttcctgtgatttttccttcttctctatagaataaatga 62
          ||||||||||||||| ||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct: 5  tggtccagaggggagctaggtacctgtgatttttccttcttttctgtagaataaatga 62





>27622_sla-mir-198:mirbase
          Length = 62

 Score = 75.8 bits (38), Expect = 3e-15
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcattggtccagaggggagataggttcctgtgatttttccttcttctctatagaataaat 60
          ||||||||||||||||||| | | | ||||||||||||||||||| ||| ||||||||||
Sbjct: 1  tcattggtccagaggggagctcgatacctgtgatttttccttcttttctgtagaataaat 60

            
Query: 61 ga 62
          ||
Sbjct: 61 ga 62





>27581_lla-mir-198:mirbase
          Length = 62

 Score = 67.9 bits (34), Expect = 7e-13
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                    
Query: 5  tggtccagaggggagataggttcctgtgatttttccttcttctctatagaataaatga 62
          ||||||||| ||||| ||||| | ||||||||||||||||| ||| ||||||||||||
Sbjct: 5  tggtccagaagggagctaggtacttgtgatttttccttcttttctgtagaataaatga 62