miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00681;mir-198;AB039661.1/2234-2295 9541:Macaca fascicularis
(crab-eating macaque)
Length = 62
Score = 107 bits (54), Expect = 1e-23
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 1 tcattggtccagaggggagataggttcctgtgatttttccttcttctctatagaataaat 60
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 tcattggtccagaggggaaataggttcctgtgatttttccttcttctctgtagaataaat 60
Query: 61 ga 62
||
Sbjct: 61 ga 62
>RF00681;mir-198;AY866280.1/427-488 9519:Lagothrix lagotricha
(common woolly monkey)
Length = 62
Score = 67.9 bits (34), Expect = 1e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 5 tggtccagaggggagataggttcctgtgatttttccttcttctctatagaataaatga 62
||||||||| ||||| ||||| | ||||||||||||||||| ||| ||||||||||||
Sbjct: 5 tggtccagaagggagctaggtacttgtgatttttccttcttttctgtagaataaatga 62
>RF00681;mir-198;AAPE01177050.1/1577-1525 59463:Myotis lucifugus
(little brown bat)
Length = 53
Score = 44.1 bits (22), Expect = 2e-04
Identities = 34/37 (91%), Gaps = 2/37 (5%)
Strand = Plus / Plus
Query: 1 tcattggtccagaggggagataggttcctgtgatttt 37
||||||||||||||| ||| ||||||||||||||||
Sbjct: 1 tcattggtccagagg--agacaggttcctgtgatttt 35
>RF00681;mir-198;AAGU02655803.1/352-293 9785:Loxodonta africana
(African savanna elephant)
Length = 60
Score = 42.1 bits (21), Expect = 7e-04
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 5 tggtccagaggggagataggttcctgtgatttt 37
|||||||||||| ||| ||||||||||||||||
Sbjct: 5 tggtccagaggg-agacaggttcctgtgatttt 36
