miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;AY865826.1/65-141 9593:Gorilla gorilla (Western
Gorilla)
Length = 77
Score = 133 bits (67), Expect = 3e-31
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 1 cctcgtcttacccagcagtgtttgggtgcggttgggagtctctaatactgccgggtaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 cctcgtcttacccagcagtgtttgggtgcggttgggagtctctaatactgccgggtaatg 65
Query: 61 atggagg 67
|||||||
Sbjct: 66 atggagg 72
>RF00241;mir-8;ABRQ01038382.1/145-67 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 101 bits (51), Expect = 1e-21
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 6 tcttacccagcagtgtttgggtgc-ggttgggagtctctaatactgccgggtaatgatgg 64
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 12 tcttacctagcagtgtttgggtgctggttgggagtctctaatactgccgggtaatgatgg 71
Query: 65 agg 67
|||
Sbjct: 72 agg 74
>RF00241;mir-8;AAFR03037717.1/371-448 13616:Monodelphis domestica
(gray short-tailed opossum)
Length = 78
Score = 93.7 bits (47), Expect = 2e-19
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 6 tcttacccagcagtgtttgggtgcggtt-gggagtctctaatactgccgggtaatgatgg 64
|||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct: 11 tcttacccagcagtgtttgggtgccgctcgggagtctctaatactgccgggtaatgatgg 70
Query: 65 agg 67
|||
Sbjct: 71 agg 73
>RF00241;mir-8;AAGW01121226.1/669-596 9986:Oryctolagus cuniculus
(rabbit)
Length = 74
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 38 gtctctaatactgccgggtaatgatgg 64
||||||||||||||| |||||||||||
Sbjct: 41 gtctctaatactgcctggtaatgatgg 67
>RF00241;mir-8;AAPY01315282.1/3050-2977 37347:Tupaia belangeri
(northern tree shrew)
Length = 74
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 38 gtctctaatactgccgggtaatgatg 63
||||||||||||||| ||||||||||
Sbjct: 41 gtctctaatactgcctggtaatgatg 66
>RF00241;mir-8;AAYZ01293785.1/5589-5517 9978:Ochotona princeps
(American pika)
Length = 73
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 tctctaatactgccgggtaatgatg 63
|||||||||||||| ||||||||||
Sbjct: 41 tctctaatactgcctggtaatgatg 65
>RF00241;mir-8;CU855953.4/78255-78183 7955:Danio rerio (zebrafish)
Length = 73
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 tctctaatactgccgggtaatgatg 63
|||||||||||||| ||||||||||
Sbjct: 41 tctctaatactgcctggtaatgatg 65
>RF00241;mir-8;BAAE01261092.1/748-823 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 tctctaatactgccgggtaatgatg 63
|||||||||||||| ||||||||||
Sbjct: 43 tctctaatactgcctggtaatgatg 67
