miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28524_hsa-mir-205:mirbase
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 aaagatcctcagacaatccatgtgcttctcttgtccttcattccaccggagtctgtctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaagatcctcagacaatccatgtgcttctcttgtccttcattccaccggagtctgtctca 60
Query: 61 tacccaaccagatttcagtggagtgaagttcaggaggcatggagctgaca 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tacccaaccagatttcagtggagtgaagttcaggaggcatggagctgaca 110
>30117_ppa-mir-205:mirbase
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 aaagatcctcagacaatccatgtgcttctcttgtccttcattccaccggagtctgtctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaagatcctcagacaatccatgtgcttctcttgtccttcattccaccggagtctgtctca 60
Query: 61 tacccaaccagatttcagtggagtgaagttcaggaggcatggagctgaca 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tacccaaccagatttcagtggagtgaagttcaggaggcatggagctgaca 110
>30283_ptr-mir-205:mirbase
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 aaagatcctcagacaatccatgtgcttctcttgtccttcattccaccggagtctgtctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaagatcctcagacaatccatgtgcttctcttgtccttcattccaccggagtctgtctca 60
Query: 61 tacccaaccagatttcagtggagtgaagttcaggaggcatggagctgaca 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tacccaaccagatttcagtggagtgaagttcaggaggcatggagctgaca 110
>30901_ppy-mir-205:mirbase
Length = 109
Score = 216 bits (109), Expect = 3e-57
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 1 aaagatcctcagacaatccatgtgcttctcttgtccttcattccaccggagtctgtctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaagatcctcagacaatccatgtgcttctcttgtccttcattccaccggagtctgtctca 60
Query: 61 tacccaaccagatttcagtggagtgaagttcaggaggcatggagctgac 109
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tacccaaccagatttcagtggagtgaagttcaggaggcatggagctgac 109
>27802_mml-mir-205:mirbase
Length = 110
Score = 208 bits (105), Expect = 6e-55
Identities = 108/109 (99%)
Strand = Plus / Plus
Query: 1 aaagatcctcagacaatccatgtgcttctcttgtccttcattccaccggagtctgtctca 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaagatcctcaggcaatccatgtgcttctcttgtccttcattccaccggagtctgtctca 60
Query: 61 tacccaaccagatttcagtggagtgaagttcaggaggcatggagctgac 109
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tacccaaccagatttcagtggagtgaagttcaggaggcatggagctgac 109
>28233_mne-mir-205:mirbase
Length = 110
Score = 208 bits (105), Expect = 6e-55
Identities = 108/109 (99%)
Strand = Plus / Plus
Query: 1 aaagatcctcagacaatccatgtgcttctcttgtccttcattccaccggagtctgtctca 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaagatcctcaggcaatccatgtgcttctcttgtccttcattccaccggagtctgtctca 60
Query: 61 tacccaaccagatttcagtggagtgaagttcaggaggcatggagctgac 109
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tacccaaccagatttcagtggagtgaagttcaggaggcatggagctgac 109
>27583_lla-mir-205:mirbase
Length = 110
Score = 200 bits (101), Expect = 2e-52
Identities = 107/109 (98%)
Strand = Plus / Plus
Query: 1 aaagatcctcagacaatccatgtgcttctcttgtccttcattccaccggagtctgtctca 60
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaagatcctcgggcaatccatgtgcttctcttgtccttcattccaccggagtctgtctca 60
Query: 61 tacccaaccagatttcagtggagtgaagttcaggaggcatggagctgac 109
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tacccaaccagatttcagtggagtgaagttcaggaggcatggagctgac 109
>27518_age-mir-205:mirbase
Length = 109
Score = 184 bits (93), Expect = 9e-48
Identities = 106/109 (97%), Gaps = 1/109 (0%)
Strand = Plus / Plus
Query: 1 aaagatcctcagacaatccatgtgcttctcttgtccttcattccaccggagtctgtctca 60
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaagatcctcgggcaatccatgtgcttctcttgtccttcattccaccggagtctgtctca 60
Query: 61 tacccaaccagatttcagtggagtgaagttcaggaggcatggagctgac 109
|||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 61 tacccaaccagatttcagtggagtgaag-tcaggaggcatggagctgac 108
>27091_eca-mir-205:mirbase
Length = 69
Score = 137 bits (69), Expect = 2e-33
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 28 ctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaa 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaa 60
Query: 88 gttcaggag 96
|||||||||
Sbjct: 61 gttcaggag 69
>26765_cfa-mir-205:mirbase
Length = 69
Score = 129 bits (65), Expect = 5e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 28 ctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaa 87
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 ctcttgtccttcattccaccggagtctgtctcgtacccaaccagatttcagtggagtgaa 60
Query: 88 gttcaggag 96
|||||||||
Sbjct: 61 gttcaggag 69
>33283_bta-mir-205:mirbase
Length = 69
Score = 129 bits (65), Expect = 5e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 28 ctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaa 87
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 ctcttgtccttcattccaccggagtctgtctcgtacccaaccagatttcagtggagtgaa 60
Query: 88 gttcaggag 96
|||||||||
Sbjct: 61 gttcaggag 69
>34035_ssc-mir-205:mirbase
Length = 69
Score = 129 bits (65), Expect = 5e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 28 ctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaa 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaa 60
Query: 88 gttcaggag 96
| |||||||
Sbjct: 61 gctcaggag 69
>32795_rno-mir-205:mirbase
Length = 108
Score = 115 bits (58), Expect = 7e-27
Identities = 90/98 (91%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 10 cagacaatccatgtgcttctcttgtccttcattccaccggagtctgtctcatacccaacc 69
||||||||||||| | | ||| ||||||||||||||||||||||||||| || || ||||
Sbjct: 10 cagacaatccatggg-tcctcctgtccttcattccaccggagtctgtcttatgcc-aacc 67
Query: 70 agatttcagtggagtgaagttcaggaggcatggagctg 107
||||||||||||||||||| ||||||||||||||||||
Sbjct: 68 agatttcagtggagtgaagctcaggaggcatggagctg 105
>25997_gga-mir-205a:mirbase
Length = 96
Score = 105 bits (53), Expect = 7e-24
Identities = 72/77 (93%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 12 gacaatccatgtgcttctcttgtccttcattccaccggagtctgtctcatacccaaccag 71
||||||||||| | |||| ||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 1 gacaatccatggg-ttctgttgtccttcattccaccggagtctgtctcgtacctaaccag 59
Query: 72 atttcagtggagtgaag 88
|||||||||||||||||
Sbjct: 60 atttcagtggagtgaag 76
>31531_oan-mir-205:mirbase
Length = 108
Score = 97.6 bits (49), Expect = 2e-21
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 16 atccatgtgcttctcttgtccttcattccaccggagtctgtctcatacccaaccagattt 75
||||||| | |||| |||||||||||||||||||||||||| || |||| || |||||||
Sbjct: 13 atccatgggtttctgttgtccttcattccaccggagtctgtttcgtacctaatcagattt 72
Query: 76 cagtggagtgaagttcaggaggcatggag 104
||||||||||||| || |||||||||||
Sbjct: 73 cagtggagtgaagcacaagaggcatggag 101
>31931_mmu-mir-205:mirbase
Length = 68
Score = 97.6 bits (49), Expect = 2e-21
Identities = 65/69 (94%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 28 ctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaa 87
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 1 ctcttgtccttcattccaccggagtctgtcttat-gccaaccagatttcagtggagtgaa 59
Query: 88 gttcaggag 96
| |||||||
Sbjct: 60 gctcaggag 68
>27423_mdo-mir-205a:mirbase
Length = 72
Score = 93.7 bits (47), Expect = 3e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 30 cttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaag 88
||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct: 1 cttgtccttcattccaccggagtctgtctcatatctaatcagatttcagtggagtgaag 59
>25827_xtr-mir-205a:mirbase
Length = 86
Score = 91.7 bits (46), Expect = 1e-19
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 32 tgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaagttc 91
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct: 14 tgtccttcattccaccggagtctgtctcatacataatcagatttcagtggagtgaagcac 73
Query: 92 aggaggcatg 101
| ||||||||
Sbjct: 74 aagaggcatg 83
>25668_xla-mir-205:mirbase
Length = 86
Score = 83.8 bits (42), Expect = 2e-17
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 32 tgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaagttc 91
|||||||||||||||||||||||||||||||| || ||||||||||| |||||||| |
Sbjct: 14 tgtccttcattccaccggagtctgtctcatacataatcagatttcagtagagtgaagcac 73
Query: 92 aggaggcatg 101
| ||||||||
Sbjct: 74 aagaggcatg 83
>25523_pma-mir-205a:mirbase
Length = 75
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 33 gtccttcattccaccggagtctgtc 57
|||||||||||||||||||||||||
Sbjct: 9 gtccttcattccaccggagtctgtc 33
>34363_dre-mir-205:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 34 tccttcattccaccggagtctgt 56
|||||||||||||||||||||||
Sbjct: 19 tccttcattccaccggagtctgt 41
>34633_fru-mir-205:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 34 tccttcattccaccggagtctgt 56
|||||||||||||||||||||||
Sbjct: 10 tccttcattccaccggagtctgt 32
>34781_tni-mir-205:mirbase
Length = 66
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 34 tccttcattccaccggagtctgt 56
|||||||||||||||||||||||
Sbjct: 3 tccttcattccaccggagtctgt 25
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 66 aaccagatttcagtggagtgaagt 89
|||||||||||||||| |||||||
Sbjct: 36 aaccagatttcagtggtgtgaagt 59
>25524_pma-mir-205b:mirbase
Length = 74
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 35 ccttcattccaccggagtctgt 56
||||||||||||||||||||||
Sbjct: 8 ccttcattccaccggagtctgt 29
