miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30290_ptr-mir-215:mirbase
Length = 110
Score = 210 bits (106), Expect = 2e-55
Identities = 109/110 (99%)
Strand = Plus / Plus
Query: 1 atcattcagaaatggtatacgggaaaatgacctatgaattgacagacaatatagctgagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcattcagaaatggtatacgggaaaatgacctatgaattgacagacaatatagctgagt 60
Query: 61 ttgtctgtcatttctttagaccaatattctgtatgactgtgctacttcaa 110
||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 ttgtctgtcatttctttaggccaatattctgtatgactgtgctacttcaa 110
>28532_hsa-mir-215:mirbase
Length = 110
Score = 202 bits (102), Expect = 4e-53
Identities = 108/110 (98%)
Strand = Plus / Plus
Query: 1 atcattcagaaatggtatacgggaaaatgacctatgaattgacagacaatatagctgagt 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcattcagaaatggtatacaggaaaatgacctatgaattgacagacaatatagctgagt 60
Query: 61 ttgtctgtcatttctttagaccaatattctgtatgactgtgctacttcaa 110
||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 ttgtctgtcatttctttaggccaatattctgtatgactgtgctacttcaa 110
>27810_mml-mir-215:mirbase
Length = 110
Score = 186 bits (94), Expect = 2e-48
Identities = 106/110 (96%)
Strand = Plus / Plus
Query: 1 atcattcagaaatggtatacgggaaaatgacctatgaattgacagacaatatagctgagt 60
|||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 atcattaagaaatggtatacaggaaaatgacctatgaattgacagacactatagctgagt 60
Query: 61 ttgtctgtcatttctttagaccaatattctgtatgactgtgctacttcaa 110
||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 ttgtctgtcatttctttaggccaatattctgtatgactgtgctacttcaa 110
>28237_mne-mir-215:mirbase
Length = 110
Score = 186 bits (94), Expect = 2e-48
Identities = 106/110 (96%)
Strand = Plus / Plus
Query: 1 atcattcagaaatggtatacgggaaaatgacctatgaattgacagacaatatagctgagt 60
|||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 atcattaagaaatggtatacaggaaaatgacctatgaattgacagacactatagctgagt 60
Query: 61 ttgtctgtcatttctttagaccaatattctgtatgactgtgctacttcaa 110
||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 ttgtctgtcatttctttaggccaatattctgtatgactgtgctacttcaa 110
>30908_ppy-mir-215:mirbase
Length = 110
Score = 178 bits (90), Expect = 6e-46
Identities = 105/110 (95%)
Strand = Plus / Plus
Query: 1 atcattcagaaatggtatacgggaaaatgacctatgaattgacagacaatatagctgagt 60
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 atcattcagaaatggtatacaggaaaatgacctatgaattgacagacaatacagctgagt 60
Query: 61 ttgtctgtcatttctttagaccaatattctgtatgactgtgctacttcaa 110
||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 61 ttgtctgtcatttctttaggccaatattctgtacaactgtgctacttcaa 110
>27098_eca-mir-215:mirbase
Length = 110
Score = 139 bits (70), Expect = 5e-34
Identities = 100/110 (90%)
Strand = Plus / Plus
Query: 1 atcattcagaaatggtatacgggaaaatgacctatgaattgacagacaatatagctgagt 60
|||||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||
Sbjct: 1 atcattaagaaatggtatacaggaaaatgacctatgaattgacagacaatatgactaagt 60
Query: 61 ttgtctgtcatttctttagaccaatattctgtatgactgtgctacttcaa 110
||||||||||||||| ||| |||||||||||||| || |||||||||||
Sbjct: 61 ttgtctgtcatttctgtaggccaatattctgtatatctctgctacttcaa 110
>34040_ssc-mir-215:mirbase
Length = 96
Score = 93.7 bits (47), Expect = 3e-20
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 12 atggtatacgggaaaatgacctatgaattgacagacaatatagctgagtttgtctgtcat 71
||||| ||| ||||||||||||||||||||||||||||| | ||| | | ||||||||||
Sbjct: 5 atggtgtacaggaaaatgacctatgaattgacagacaatgtggctaaatctgtctgtcat 64
Query: 72 ttctttagaccaatattctgtat 94
|||| ||| ||||||||||||||
Sbjct: 65 ttctgtaggccaatattctgtat 87
>26774_cfa-mir-215:mirbase
Length = 79
Score = 81.8 bits (41), Expect = 1e-16
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 22 ggaaaatgacctatgaattgacagacaatatagctgagtttgtctgtcatttctttagac 81
||||||||||||| ||||||| ||||||| | ||| |||||||||||||||| | ||| |
Sbjct: 7 ggaaaatgacctacgaattgatagacaatttggctaagtttgtctgtcatttttgtaggc 66
Query: 82 caatattctgtat 94
|||||||||||||
Sbjct: 67 caatattctgtat 79
>31535_oan-mir-215:mirbase
Length = 118
Score = 73.8 bits (37), Expect = 2e-14
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 8 agaaatggtatacgggaaaatgacctatgaattgacagacaatatagctgagtttgtctg 67
||||||||| ||| ||||||||||||||||||||||||||| |||| | || |||||||
Sbjct: 11 agaaatggtgtacaggaaaatgacctatgaattgacagacagtata-tttagattgtctg 69
Query: 68 tcatttctttagaccaa 84
|||||||| ||| ||||
Sbjct: 70 tcatttctgtaggccaa 86
>33291_bta-mir-215:mirbase
Length = 79
Score = 73.8 bits (37), Expect = 2e-14
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 22 ggaaaatgacctatgaattgacagacaatatagctgagtttgtctgtcatttctttagac 81
|||||||||||||||||||||||||||| | || ||| |||||||||||||| ||| |
Sbjct: 7 ggaaaatgacctatgaattgacagacaacgtgactaagtctgtctgtcatttctgtaggc 66
Query: 82 caatattctgtat 94
|||| ||||||||
Sbjct: 67 caatgttctgtat 79
>27429_mdo-mir-215:mirbase
Length = 103
Score = 65.9 bits (33), Expect = 6e-12
Identities = 58/65 (89%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 22 ggaaaatgacctatgaattgacagacaatatagct-gagtttgtctgtcatttctttaga 80
||||||||||||||||||||||||||| |||| | |||||||||||||||||| |||
Sbjct: 18 ggaaaatgacctatgaattgacagacattatatttaaagtttgtctgtcatttctgtagg 77
Query: 81 ccaat 85
|||||
Sbjct: 78 ccaat 82
>32805_rno-mir-215:mirbase
Length = 97
Score = 60.0 bits (30), Expect = 4e-10
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 26 aatgacctatgaattgacagacaatatagctgagtttgtctgtcatttctttagaccaat 85
|||||||||||| |||||||||| | | |||| || ||||||||| |||| ||| |||||
Sbjct: 13 aatgacctatgatttgacagacagtgtggctgcgtgtgtctgtca-ttctgtaggccaat 71
Query: 86 attctgtatg 95
||||||||||
Sbjct: 72 attctgtatg 81
>26002_gga-mir-215:mirbase
Length = 105
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 22 ggaaaatgacctatgaattgacagac 47
||||||||||||||||||||||||||
Sbjct: 21 ggaaaatgacctatgaattgacagac 46
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 65 ctgtcatttctttagaccaatattctgt 92
||||||||||| ||| ||||||||||||
Sbjct: 63 ctgtcatttctataggccaatattctgt 90
>26510_tgu-mir-215:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 22 ggaaaatgacctatgaattgacagac 47
||||||||||||||||||||||||||
Sbjct: 6 ggaaaatgacctatgaattgacagac 31
>31942_mmu-mir-215:mirbase
Length = 112
Score = 52.0 bits (26), Expect = 9e-08
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 26 aatgacctatgaattgacagacaatatagctgagtttgtctgtcatttctttagaccaat 85
|||||||||||| ||||||||| | ||||| || ||||||||| |||| ||| |||||
Sbjct: 29 aatgacctatgatttgacagaccgtgcagctgtgtatgtctgtca-ttctgtaggccaat 87
Query: 86 attctgtatg 95
||||||||||
Sbjct: 88 attctgtatg 97
>25834_xtr-mir-215:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 tgtctgtcatttctttagaccaatattctg 91
|||||||||||||| ||| |||||||||||
Sbjct: 55 tgtctgtcatttctgtaggccaatattctg 84
