miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00130;mir-192;AY866319.1/760-864 9544:Macaca mulatta (rhesus
monkey)
Length = 105
Score = 176 bits (89), Expect = 4e-44
Identities = 98/101 (97%)
Strand = Plus / Plus
Query: 8 agaaatggtatacgggaaaatgacctatgaattgacagacaatatagctgagtttgtctg 67
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 5 agaaatggtatacaggaaaatgacctatgaattgacagacactatagctgagtttgtctg 64
Query: 68 tcatttctttagaccaatattctgtatgactgtgctacttc 108
|||||||||||| ||||||||||||||||||||||||||||
Sbjct: 65 tcatttctttaggccaatattctgtatgactgtgctacttc 105
>RF00130;mir-192;ABRT010021146.1/1809-1713 9478:Tarsius syrichta
(Philippine tarsier)
Length = 97
Score = 111 bits (56), Expect = 2e-24
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 25 aaatgacctatgaattgacagacaatatagctgagtttgtctgtcatttctttagaccaa 84
|||||||||||||||||||||||||||| ||| |||||||||||||||||| ||| ||||
Sbjct: 14 aaatgacctatgaattgacagacaatatggctaagtttgtctgtcatttctataggccaa 73
Query: 85 tattctgtatgactgtgctacttc 108
||||||||||| || ||| |||||
Sbjct: 74 tattctgtatgtctctgccacttc 97
>RF00130;mir-192;ABRO01051746.1/2172-2068 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 105
Score = 109 bits (55), Expect = 8e-24
Identities = 88/99 (88%)
Strand = Plus / Plus
Query: 10 aaatggtatacgggaaaatgacctatgaattgacagacaatatagctgagtttgtctgtc 69
||||||| ||| |||||||||||||||||||||||||| || | ||||| ||||||||||
Sbjct: 7 aaatggtgtacaggaaaatgacctatgaattgacagacgatgtggctgaatttgtctgtc 66
Query: 70 atttctttagaccaatattctgtatgactgtgctacttc 108
| |||| ||| ||||||||||||||| || |||||||||
Sbjct: 67 acttctataggccaatattctgtatgtctctgctacttc 105
>RF00130;mir-192;AAIY01186786.1/2491-2595 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 105
Score = 109 bits (55), Expect = 8e-24
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 22 ggaaaatgacctatgaattgacagacaatatagctgagtttgtctgtcatttctttagac 81
||||||||||||||||||||||||||||||| || || ||||||||||||||| ||| |
Sbjct: 19 ggaaaatgacctatgaattgacagacaatatggccaagcttgtctgtcatttctgtaggc 78
Query: 82 caatattctgtatgactgtgctacttc 108
|||||||||||||| || |||||||||
Sbjct: 79 caatattctgtatgtctctgctacttc 105
>RF00130;mir-192;AAGU02014260.1/2711-2609 9785:Loxodonta africana
(African savanna elephant)
Length = 103
Score = 107 bits (54), Expect = 3e-23
Identities = 81/90 (90%)
Strand = Plus / Plus
Query: 6 tcagaaatggtatacgggaaaatgacctatgaattgacagacaatatagctgagtttgtc 65
||||||| ||| ||| ||||||||||||||||| ||||||||||||| ||| ||||||||
Sbjct: 3 tcagaaacggtgtacaggaaaatgacctatgaactgacagacaatatggctaagtttgtc 62
Query: 66 tgtcatttctttagaccaatattctgtatg 95
|||||||||| ||| |||| ||||||||||
Sbjct: 63 tgtcatttctgtaggccaacattctgtatg 92
>RF00130;mir-192;AANN01206173.1/3045-3149 9365:Erinaceus europaeus
(western European hedgehog)
Length = 105
Score = 103 bits (52), Expect = 5e-22
Identities = 79/88 (89%)
Strand = Plus / Plus
Query: 7 cagaaatggtatacgggaaaatgacctatgaattgacagacaatatagctgagtttgtct 66
|||| ||||| ||| ||||||||||||||||||||||||| ||| | |||||| ||||||
Sbjct: 4 cagacatggtgtacaggaaaatgacctatgaattgacagataatgtggctgagcttgtct 63
Query: 67 gtcatttctttagaccaatattctgtat 94
||||||||| ||| ||||||||||||||
Sbjct: 64 gtcatttctgtaggccaatattctgtat 91
>RF00130;mir-192;ABRN01401597.1/3154-3052 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 103
Score = 103 bits (52), Expect = 5e-22
Identities = 82/91 (90%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 4 attcagaaatggtatacgggaaaatgacctatgaattgacagacaatatagctgagtttg 63
||||||||||||| ||| ||||||||||||||||||||||||||| ||| | | |||||
Sbjct: 1 attcagaaatggtgtacaggaaaatgacctatgaattgacagacagtatggtt--gtttg 58
Query: 64 tctgtcatttctttagaccaatattctgtat 94
|||||||||||| ||| ||||||||||||||
Sbjct: 59 tctgtcatttctgtaggccaatattctgtat 89
>RF00130;mir-192;AAEX02008010.1/236844-236948 9615:Canis lupus
familiaris (dog)
Length = 105
Score = 89.7 bits (45), Expect = 7e-18
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 10 aaatggtatacgggaaaatgacctatgaattgacagacaatatagctgagtttgtctgtc 69
||||||| ||| ||||||||||||| ||||||| ||||||| | ||| ||||||||||||
Sbjct: 7 aaatggtgtacaggaaaatgacctacgaattgatagacaatttggctaagtttgtctgtc 66
Query: 70 atttctttagaccaatattctgtat 94
|||| | ||| ||||||||||||||
Sbjct: 67 atttttgtaggccaatattctgtat 91
>RF00130;mir-192;AAPY01700927.1/1101-997 37347:Tupaia belangeri
(northern tree shrew)
Length = 105
Score = 83.8 bits (42), Expect = 4e-16
Identities = 77/86 (89%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 10 aaatggtatacgggaaaatgacctatgaattgacagacaatatagctgagtt-tgtctgt 68
||||||||||| |||||||||||||||| |||||||||||| | ||| |||| |||||||
Sbjct: 7 aaatggtatacaggaaaatgacctatgacttgacagacaatgtggct-agttctgtctgt 65
Query: 69 catttctttagaccaatattctgtat 94
|||||| ||| ||||||||||||||
Sbjct: 66 catttccgtaggccaatattctgtat 91
>RF00130;mir-192;AAGW01566423.1/1450-1554 9986:Oryctolagus
cuniculus (rabbit)
Length = 105
Score = 77.8 bits (39), Expect = 3e-14
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 8 agaaatggtatacgggaaaatgacctatgaattgacagacaatatagctgagtttgtctg 67
|||| ||||||| ||||| ||||||||||| ||||||| |||| ||| | ||||||||
Sbjct: 5 agaattggtatataggaaattgacctatgaaatgacagatgatatggctaaatttgtctg 64
Query: 68 tcatttctttagaccaatattctgtat 94
|||||||| ||| ||||||||||||||
Sbjct: 65 tcatttctgtaggccaatattctgtat 91
>RF00130;mir-192;AAPN01160419.1/4341-4444 9258:Ornithorhynchus
anatinus (platypus)
Length = 104
Score = 73.8 bits (37), Expect = 4e-13
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 8 agaaatggtatacgggaaaatgacctatgaattgacagacaatatagctgagtttgtctg 67
||||||||| ||| ||||||||||||||||||||||||||| |||| | || |||||||
Sbjct: 5 agaaatggtgtacaggaaaatgacctatgaattgacagacagtata-tttagattgtctg 63
Query: 68 tcatttctttagaccaa 84
|||||||| ||| ||||
Sbjct: 64 tcatttctgtaggccaa 80
>RF00130;mir-192;ABRP01022009.1/1654-1550 132908:Pteropus vampyrus
(large flying fox)
Length = 105
Score = 73.8 bits (37), Expect = 4e-13
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 22 ggaaaatgacctatgaattgacagacaatatagctgagtttgtctgtcatttctttagac 81
||||||||||||||| || |||||||| ||||| |||| |||||||| ||||| ||| |
Sbjct: 19 ggaaaatgacctatgcatcgacagacagtatagtcgagtgtgtctgtcgtttctataggc 78
Query: 82 caatattctgtat 94
|||||||||||||
Sbjct: 79 caatattctgtat 91
>RF00130;mir-192;AAQR01465597.1/732-628 30611:Otolemur garnettii
(small-eared galago)
Length = 105
Score = 71.9 bits (36), Expect = 2e-12
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 13 tggtatacgggaaaatgacctatgaattgacagacaatatagctgagtttgtctgtcatt 72
|||||||| ||||| |||||||| || ||||||| |||| ||| |||||||||||||
Sbjct: 10 tggtatacaggaaattgacctataaactgacagataatacggctccatttgtctgtcatt 69
Query: 73 tctttagaccaatattctgtatgactgtgctacttc 108
||| ||| ||||||||||| ||| || |||||||||
Sbjct: 70 tctgtaggccaatattctgcatgtctttgctacttc 105
>RF00130;mir-192;AAFR03023364.1/184964-184859 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 106
Score = 65.9 bits (33), Expect = 1e-10
Identities = 58/65 (89%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 22 ggaaaatgacctatgaattgacagacaatatagct-gagtttgtctgtcatttctttaga 80
||||||||||||||||||||||||||| |||| | |||||||||||||||||| |||
Sbjct: 19 ggaaaatgacctatgaattgacagacattatatttaaagtttgtctgtcatttctgtagg 78
Query: 81 ccaat 85
|||||
Sbjct: 79 ccaat 83
>RF00130;mir-192;AAHX01077280.1/19936-20038 10116:Rattus
norvegicus (Norway rat)
Length = 103
Score = 60.0 bits (30), Expect = 6e-09
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 26 aatgacctatgaattgacagacaatatagctgagtttgtctgtcatttctttagaccaat 85
|||||||||||| |||||||||| | | |||| || ||||||||| |||| ||| |||||
Sbjct: 22 aatgacctatgatttgacagacagtgtggctgcgtgtgtctgtca-ttctgtaggccaat 80
Query: 86 attctgtatg 95
||||||||||
Sbjct: 81 attctgtatg 90
>RF00130;mir-192;AAHY01149687.1/2360-2462 10090:Mus musculus
(house mouse)
Length = 103
Score = 52.0 bits (26), Expect = 2e-06
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 26 aatgacctatgaattgacagacaatatagctgagtttgtctgtcatttctttagaccaat 85
|||||||||||| ||||||||| | ||||| || ||||||||| |||| ||| |||||
Sbjct: 22 aatgacctatgatttgacagaccgtgcagctgtgtatgtctgtca-ttctgtaggccaat 80
Query: 86 attctgtatg 95
||||||||||
Sbjct: 81 attctgtatg 90
>RF00130;mir-192;ABQF01123426.1/24360-24257 59729:Taeniopygia
guttata
Length = 104
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 22 ggaaaatgacctatgaattgacagac 47
||||||||||||||||||||||||||
Sbjct: 19 ggaaaatgacctatgaattgacagac 44
>RF00130;mir-192;AADN02012132.1/23656-23553 9031:Gallus gallus
(chicken)
Length = 104
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 22 ggaaaatgacctatgaattgacagac 47
||||||||||||||||||||||||||
Sbjct: 19 ggaaaatgacctatgaattgacagac 44
