miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00714;MIR535;CAAP02013010.1/2187-2087 29760:Vitis vinifera
Length = 101
Score = 60.0 bits (30), Expect = 6e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 12 tgacaacgagagagagcacgcttgtcagcatgtatgtaaagcacatcagtgtttacaggc 71
|||||||||||||||||| |||||||||||| |||| | | |||| | |||||||||||
Sbjct: 11 tgacaacgagagagagcatgcttgtcagcattcatgtgaggaacatgactgtttacaggc 70
Query: 72 gt 73
||
Sbjct: 71 gt 72
>RF00714;MIR535;ABIM01002931.1/4831-4931 3649:Carica papaya
(papaya)
Length = 101
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 gtgacaacgagagagagcacgcttgt 36
||||||||||||||||||||||||||
Sbjct: 10 gtgacaacgagagagagcacgcttgt 35
>RF00714;MIR535;AASG02028037.1/959-864 3988:Ricinus communis
(castor bean)
Length = 96
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 12 tgacaacgagagagagcacgcttgt 36
|||||||||||||||||||||||||
Sbjct: 11 tgacaacgagagagagcacgcttgt 35
>RF00714;MIR535;ABEU01006897.1/4394-4494 145481:Physcomitrella
patens subsp. patens
Length = 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 agtgacaacgagagagagcacgct 33
||||||||||||||||||||||||
Sbjct: 9 agtgacaacgagagagagcacgct 32
>RF00714;MIR535;ABEU01009956.1/139970-139869 145481:Physcomitrella
patens subsp. patens
Length = 102
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 gtgacaacgagagagagcacgct 33
|||||||||||||||||||||||
Sbjct: 10 gtgacaacgagagagagcacgct 32
>RF00714;MIR535;ABEU01004601.1/20377-20277 145481:Physcomitrella
patens subsp. patens
Length = 101
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 gtgacaacgagagagagcacgct 33
|||||||||||||||||||||||
Sbjct: 10 gtgacaacgagagagagcacgct 32
>RF00714;MIR535;AASG02007689.1/8432-8332 3988:Ricinus communis
(castor bean)
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 12 tgacaacgagagagagcacgcttgtcagca 41
|||| ||||||||||||||| |||||||||
Sbjct: 11 tgacgacgagagagagcacgtttgtcagca 40
>RF00714;MIR535;AAAA02031914.1/1343-1245 39946:Oryza sativa Indica
Group
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 gtgacaacgagagagagcacgc 32
||||||||||||||||||||||
Sbjct: 3 gtgacaacgagagagagcacgc 24
>RF00714;MIR535;ABEU01003761.1/27167-27269 145481:Physcomitrella
patens subsp. patens
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 gtgacaacgagagagagcacgc 32
||||||||||||||||||||||
Sbjct: 10 gtgacaacgagagagagcacgc 31
