miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28270_ggo-mir-24:mirbase
Length = 73
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60
Query: 61 agcaggaacaggg 73
|||||||||||||
Sbjct: 61 agcaggaacaggg 73
>30057_ppa-mir-24-2:mirbase
Length = 73
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60
Query: 61 agcaggaacaggg 73
|||||||||||||
Sbjct: 61 agcaggaacaggg 73
>30164_ptr-mir-24-2:mirbase
Length = 73
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60
Query: 61 agcaggaacaggg 73
|||||||||||||
Sbjct: 61 agcaggaacaggg 73
>30769_ppy-mir-24-2:mirbase
Length = 73
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60
Query: 61 agcaggaacaggg 73
|||||||||||||
Sbjct: 61 agcaggaacaggg 73
>27668_mml-mir-24-2:mirbase
Length = 73
Score = 135 bits (68), Expect = 5e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttc 60
Query: 61 agcaggaacagg 72
||||||||||||
Sbjct: 61 agcaggaacagg 72
>28184_mne-mir-24-2:mirbase
Length = 73
Score = 135 bits (68), Expect = 5e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttc 60
Query: 61 agcaggaacagg 72
||||||||||||
Sbjct: 61 agcaggaacagg 72
>33148_bta-mir-24-2:mirbase
Length = 72
Score = 127 bits (64), Expect = 1e-30
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 1 ctctgcctcccgtgcctactgagctgaaacacagttgatttgtgcacactggctcagttc 60
Query: 61 agcaggaacagg 72
||||||||||||
Sbjct: 61 agcaggaacagg 72
>33928_ssc-mir-24-1:mirbase
Length = 72
Score = 119 bits (60), Expect = 3e-28
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 1 ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60
||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||
Sbjct: 1 ctctgcctcccgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttc 60
Query: 61 agcaggaacagg 72
||||||||||||
Sbjct: 61 agcaggaacagg 72
>26961_eca-mir-24:mirbase
Length = 68
Score = 115 bits (58), Expect = 4e-27
Identities = 64/66 (96%)
Strand = Plus / Plus
Query: 7 ctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttcagcagg 66
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 1 ctcccgtgcctactgagctgaaacacagttggtttgtgcagactggctcagttcagcagg 60
Query: 67 aacagg 72
||||||
Sbjct: 61 aacagg 66
>26640_cfa-mir-24-2:mirbase
Length = 62
Score = 99.6 bits (50), Expect = 3e-22
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 11 cgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttcagcaggaaca 70
||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct: 1 cgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcaggaaca 60
Query: 71 gg 72
||
Sbjct: 61 gg 62
>27346_mdo-mir-24-2:mirbase
Length = 73
Score = 95.6 bits (48), Expect = 4e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 5 gcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttcagca 64
|||||| |||||||||||||||||||||||||| |||| || |||||||||||||||||
Sbjct: 1 gcctcctgtgcctactgagctgaaacacagttgctttggataaactggctcagttcagca 60
Query: 65 ggaacagg 72
||||||||
Sbjct: 61 ggaacagg 68
>31792_mmu-mir-24-2:mirbase
Length = 107
Score = 73.8 bits (37), Expect = 1e-14
Identities = 61/68 (89%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 5 gcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttcagca 64
||||||||||||||||||||||||||| |||| || || ||||||||||||||||||
Sbjct: 18 gcctcccgtgcctactgagctgaaaca--gttgattccagtgcactggctcagttcagca 75
Query: 65 ggaacagg 72
||||||||
Sbjct: 76 ggaacagg 83
>32513_mmu-mir-3074-2:mirbase
Length = 83
Score = 73.8 bits (37), Expect = 1e-14
Identities = 61/68 (89%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 5 gcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttcagca 64
||||||||||||||||||||||||||| |||| || || ||||||||||||||||||
Sbjct: 76 gcctcccgtgcctactgagctgaaaca--gttgattccagtgcactggctcagttcagca 19
Query: 65 ggaacagg 72
||||||||
Sbjct: 18 ggaacagg 11
>32514_mmu-mir-3074-2:mirbase
Length = 83
Score = 73.8 bits (37), Expect = 1e-14
Identities = 61/68 (89%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 5 gcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttcagca 64
||||||||||||||||||||||||||| |||| || || ||||||||||||||||||
Sbjct: 76 gcctcccgtgcctactgagctgaaaca--gttgattccagtgcactggctcagttcagca 19
Query: 65 ggaacagg 72
||||||||
Sbjct: 18 ggaacagg 11
>32676_rno-mir-24-2:mirbase
Length = 108
Score = 65.9 bits (33), Expect = 4e-12
Identities = 60/68 (88%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 5 gcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttcagca 64
|||||| |||||||||||||||||||| |||| || || ||||||||||||||||||
Sbjct: 18 gcctcctgtgcctactgagctgaaaca--gttgattccagtgcactggctcagttcagca 75
Query: 65 ggaacagg 72
||||||||
Sbjct: 76 ggaacagg 83
>25716_xtr-mir-24a:mirbase
Length = 67
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 acactggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||||
Sbjct: 39 acactggctcagttcagcaggaacagg 65
>25717_xtr-mir-24a:mirbase
Length = 67
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 acactggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||||
Sbjct: 39 acactggctcagttcagcaggaacagg 65
>26413_tgu-mir-24:mirbase
Length = 132
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 acactggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||||
Sbjct: 97 acactggctcagttcagcaggaacagg 123
>26639_cfa-mir-24-1:mirbase
Length = 62
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 acactggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||||
Sbjct: 36 acactggctcagttcagcaggaacagg 62
>26962_eca-mir-24-2:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 acactggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||||
Sbjct: 40 acactggctcagttcagcaggaacagg 66
>27667_mml-mir-24-1:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 acactggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||||
Sbjct: 40 acactggctcagttcagcaggaacagg 66
>28183_mne-mir-24-1:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 acactggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||||
Sbjct: 40 acactggctcagttcagcaggaacagg 66
>28377_hsa-mir-24-1:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 acactggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||||
Sbjct: 40 acactggctcagttcagcaggaacagg 66
>29230_hsa-mir-3074:mirbase
Length = 81
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 46 acactggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||||
Sbjct: 35 acactggctcagttcagcaggaacagg 9
>29231_hsa-mir-3074:mirbase
Length = 81
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 46 acactggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||||
Sbjct: 35 acactggctcagttcagcaggaacagg 9
>30056_ppa-mir-24-1:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 acactggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||||
Sbjct: 40 acactggctcagttcagcaggaacagg 66
>30163_ptr-mir-24-1:mirbase
Length = 67
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 acactggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||||
Sbjct: 39 acactggctcagttcagcaggaacagg 65
>30768_ppy-mir-24-1:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 acactggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||||
Sbjct: 40 acactggctcagttcagcaggaacagg 66
>31791_mmu-mir-24-1:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 acactggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||||
Sbjct: 40 acactggctcagttcagcaggaacagg 66
>32511_mmu-mir-3074-1:mirbase
Length = 85
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 46 acactggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||||
Sbjct: 37 acactggctcagttcagcaggaacagg 11
>32512_mmu-mir-3074-1:mirbase
Length = 85
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 46 acactggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||||
Sbjct: 37 acactggctcagttcagcaggaacagg 11
>32675_rno-mir-24-1:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 acactggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||||
Sbjct: 40 acactggctcagttcagcaggaacagg 66
>33024_rno-mir-3074:mirbase
Length = 117
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 46 acactggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||||
Sbjct: 50 acactggctcagttcagcaggaacagg 24
>33147_bta-mir-24-1:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 acactggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||||
Sbjct: 40 acactggctcagttcagcaggaacagg 66
>33929_ssc-mir-24-2:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 acactggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||||
Sbjct: 48 acactggctcagttcagcaggaacagg 74
>34230_dre-mir-24-3:mirbase
Length = 142
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 acactggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||||
Sbjct: 76 acactggctcagttcagcaggaacagg 102
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 gcctcccgtgcctactgagctga 27
|||||||||||||||||||||||
Sbjct: 37 gcctcccgtgcctactgagctga 59
>31442_oan-mir-24:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 47 cactggctcagttcagcaggaacagg 72
||||||||||||||||||||||||||
Sbjct: 49 cactggctcagttcagcaggaacagg 74
>34228_dre-mir-24-1:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 47 cactggctcagttcagcaggaacagg 72
||||||||||||||||||||||||||
Sbjct: 46 cactggctcagttcagcaggaacagg 71
>34229_dre-mir-24-2:mirbase
Length = 82
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 48 actggctcagttcagcaggaacaggg 73
||||||||||||||||||||||||||
Sbjct: 49 actggctcagttcagcaggaacaggg 74
>34709_tni-mir-24-1:mirbase
Length = 70
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 47 cactggctcagttcagcaggaacagg 72
||||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacagg 66
>25444_pma-mir-24:mirbase
Length = 94
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 cactggctcagttcagcaggaacag 71
|||||||||||||||||||||||||
Sbjct: 55 cactggctcagttcagcaggaacag 79
>25908_gga-mir-24:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 actggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacagg 66
>34561_fru-mir-24-1:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 actggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacagg 76
>34562_fru-mir-24-1:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 actggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacagg 76
>34563_fru-mir-24-2:mirbase
Length = 82
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 49 ctggctcagttcagcaggaacaggg 73
|||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacaggg 74
>34710_tni-mir-24-2:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 49 ctggctcagttcagcaggaacaggg 73
|||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacaggg 74
>34231_dre-mir-24-4:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 49 ctggctcagttcagcaggaacagg 72
||||||||||||||||||||||||
Sbjct: 55 ctggctcagttcagcaggaacagg 78
>27345_mdo-mir-24-1:mirbase
Length = 57
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 acactggctcagttcagcagga 67
||||||||||||||||||||||
Sbjct: 36 acactggctcagttcagcagga 57
>25660_xla-mir-24b:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 49 ctggctcagttcagcagga 67
|||||||||||||||||||
Sbjct: 44 ctggctcagttcagcagga 62
>25718_xtr-mir-24b:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 49 ctggctcagttcagcagga 67
|||||||||||||||||||
Sbjct: 44 ctggctcagttcagcagga 62
