miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00456;mir-34;ABRQ01219522.1/1254-1171 9813:Procavia capensis
(cape rock hyrax)
Length = 84
Score = 135 bits (68), Expect = 1e-31
Identities = 80/84 (95%)
Strand = Plus / Plus
Query: 1 gtgctcggtttgtaggcagtgtcattagctgattgtactgtggtggttacaatcactaac 60
|||||||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtaattagctgattgtactctggagcttacaatcactaac 60
Query: 61 tccactgccatcaaaacaaggcac 84
||||||||||||||||||||||||
Sbjct: 61 tccactgccatcaaaacaaggcac 84
>RF00456;mir-34;ABRO01055556.1/3019-2935 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 85
Score = 113 bits (57), Expect = 4e-25
Identities = 79/85 (92%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 gtgctcggtttgtaggcagtgtcattagctgattgtactgtggtggtt-acaatcactaa 59
|||||||||||||||||||||| ||||||||||||||| |||| || |||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtaattagctgattgtacctcggtgctttacaatcactaa 60
Query: 60 ctccactgccatcaaaacaaggcac 84
|||||||||||||||||||||||||
Sbjct: 61 ctccactgccatcaaaacaaggcac 85
>RF00456;mir-34;ABQO011207158.1/502-419 9315:Macropus eugenii
(tammar wallaby)
Length = 84
Score = 95.6 bits (48), Expect = 8e-20
Identities = 75/84 (89%)
Strand = Plus / Plus
Query: 1 gtgctcggtttgtaggcagtgtcattagctgattgtactgtggtggttacaatcactaac 60
|||||||||||||||||||||| ||||||||||||| | | || | |||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtagttagctgattgtattctactgcctgcaatcactaac 60
Query: 61 tccactgccatcaaaacaaggcac 84
||||||||||||||||||||||||
Sbjct: 61 tccactgccatcaaaacaaggcac 84
>RF00456;mir-34;AAPN01276489.1/6299-6216 9258:Ornithorhynchus
anatinus (platypus)
Length = 84
Score = 71.9 bits (36), Expect = 1e-12
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 1 gtgctcggtttgtaggcagtgtcattagctgattgtactgtggtggttacaatcactaac 60
|||||||||||||||||||||| ||||||||||| || | | |||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtagttagctgattggaccatcccgcccgcaatcactaac 60
Query: 61 tccactgccatcaaaacaaggcac 84
||||||||||||||||||||||||
Sbjct: 61 tccactgccatcaaaacaaggcac 84
>RF00456;mir-34;ABQF01045704.1/19863-19946 59729:Taeniopygia
guttata
Length = 84
Score = 56.0 bits (28), Expect = 7e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 49 acaatcactaactccactgccatcaaaacaaggcac 84
||||||||||||| |||||||| |||||||||||||
Sbjct: 49 acaatcactaacttcactgccaccaaaacaaggcac 84
>RF00456;mir-34;AADN02058045.1/6812-6729 9031:Gallus gallus
(chicken)
Length = 84
Score = 56.0 bits (28), Expect = 7e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 49 acaatcactaactccactgccatcaaaacaaggcac 84
||||||||||| | ||||||||||||||||||||||
Sbjct: 49 acaatcactaaattcactgccatcaaaacaaggcac 84
>RF00456;mir-34;AAWZ01034188.1/4744-4661 28377:Anolis carolinensis
(green anole)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 7 ggtttgtaggcagtgtcattagctgattgt 36
|||||||||||||||| ||||||||||||
Sbjct: 7 ggtttgtaggcagtgtagttagctgattgt 36
