miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30797_ppy-mir-92b:mirbase
Length = 96
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 cgggccccgggcgggcgggagggacgggacgcggtgcagtgttgttttttcccccgccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgggccccgggcgggcgggagggacgggacgcggtgcagtgttgttttttcccccgccaa 60
Query: 61 tattgcactcgtcccggcctccgg 84
||||||||||||||||||||||||
Sbjct: 61 tattgcactcgtcccggcctccgg 84
>27697_mml-mir-92b:mirbase
Length = 96
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 cgggccccgggcgggcgggagggacgggacgcggtgcagtgttgttttttcccccgccaa 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 cgggccccgggcgggcgggagggacgggacgcggtgcagtgttgttctttcccccgccaa 60
Query: 61 tattgcactcgtcccggcctccgg 84
||||||||||||||||||||||||
Sbjct: 61 tattgcactcgtcccggcctccgg 84
>33180_bta-mir-92b:mirbase
Length = 96
Score = 151 bits (76), Expect = 1e-37
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 1 cgggccccgggcgggcgggagggacgggacgcggtgcagtgttgttttttcccccgccaa 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 1 cgggccccgggcgggcgggagggacgggacgcggtgcagtgttgttctttcccctgccaa 60
Query: 61 tattgcactcgtcccggcctccgg 84
||||||||||||||||||||||||
Sbjct: 61 tattgcactcgtcccggcctccgg 84
>26990_eca-mir-92b:mirbase
Length = 75
Score = 135 bits (68), Expect = 6e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 13 gggcgggagggacgggacgcggtgcagtgttgttttttcccccgccaatattgcactcgt 72
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 gggcgggagggacgggacgcggtgcagtgttgttctttcccccgccaatattgcactcgt 60
Query: 73 cccggcctccgg 84
||||||||||||
Sbjct: 61 cccggcctccgg 72
>33952_ssc-mir-92b:mirbase
Length = 80
Score = 131 bits (66), Expect = 1e-31
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 11 gcgggcgggagggacgggacgcggtgcagtgttgttttttcccccgccaatattgcactc 70
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 1 gcgggcgggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactc 60
Query: 71 gtcccggcctccgg 84
||||||||||||||
Sbjct: 61 gtcccggcctccgg 74
>33953_ssc-mir-92b:mirbase
Length = 80
Score = 131 bits (66), Expect = 1e-31
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 11 gcgggcgggagggacgggacgcggtgcagtgttgttttttcccccgccaatattgcactc 70
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 1 gcgggcgggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactc 60
Query: 71 gtcccggcctccgg 84
||||||||||||||
Sbjct: 61 gtcccggcctccgg 74
>31821_mmu-mir-92b:mirbase
Length = 83
Score = 119 bits (60), Expect = 4e-28
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 13 gggcgggagggacgggacgcggtgcagtgttgttttttcccccgccaatattgcactcgt 72
||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||
Sbjct: 4 gggcgggagggacgggacgtggtgcagtgttgttctttcccctgccaatattgcactcgt 63
Query: 73 cccggcctccgg 84
||||||||||||
Sbjct: 64 cccggcctccgg 75
>32702_rno-mir-92b:mirbase
Length = 83
Score = 119 bits (60), Expect = 4e-28
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 13 gggcgggagggacgggacgcggtgcagtgttgttttttcccccgccaatattgcactcgt 72
|||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 4 gggcaggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactcgt 63
Query: 73 cccggcctccgg 84
||||||||||||
Sbjct: 64 cccggcctccgg 75
>26668_cfa-mir-92b:mirbase
Length = 63
Score = 109 bits (55), Expect = 4e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 20 agggacgggacgcggtgcagtgttgttttttcccccgccaatattgcactcgtcccggcc 79
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 1 agggacgggacgcggtgcagtgttgttctctcccccgccaatattgcactcgtcccggcc 60
Query: 80 tcc 82
|||
Sbjct: 61 tcc 63
>34258_dre-mir-92b:mirbase
Length = 82
Score = 65.9 bits (33), Expect = 5e-12
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 34 gtgcagtgttgttttttcccccgccaatattgcactcgtcccggcctcc 82
||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 29 gtgcagtgttgttcaatctcccgccaatattgcactcgtcccggcctcc 77
>25749_xtr-mir-92b:mirbase
Length = 73
Score = 58.0 bits (29), Expect = 1e-09
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 34 gtgcagtgttgttttttcccccgccaatattgcactcgtcccggcctcc 82
||||| |||||| |||| || |||||||||||||||||||||||||||
Sbjct: 21 gtgcactgttgtcctttctcctgccaatattgcactcgtcccggcctcc 69
>34875_sko-mir-92c:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 aatattgcactcgtcccggcct 80
||||||||||||||||||||||
Sbjct: 59 aatattgcactcgtcccggcct 80
>34949_xbo-mir-92a:mirbase
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 aatattgcactcgtcccggcct 80
||||||||||||||||||||||
Sbjct: 48 aatattgcactcgtcccggcct 69
>34820_spu-mir-92c:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 atattgcactcgtcccggcct 80
|||||||||||||||||||||
Sbjct: 60 atattgcactcgtcccggcct 80
>38110_bma-mir-92:mirbase
Length = 105
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 atattgcactcgtcccggcct 80
|||||||||||||||||||||
Sbjct: 66 atattgcactcgtcccggcct 86
>25350_odi-mir-92a:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tattgcactcgtcccggcct 80
||||||||||||||||||||
Sbjct: 66 tattgcactcgtcccggcct 85
>25466_pma-mir-92a:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tattgcactcgtcccggcct 80
||||||||||||||||||||
Sbjct: 49 tattgcactcgtcccggcct 68
