miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AAGU02300353.1/1892-1804 9785:Loxodonta africana
(African savanna elephant)
Length = 89
Score = 151 bits (76), Expect = 2e-36
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 21 gtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagataac 80
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 6 gtgaggtagtaagttgtattgttgtggggtagggattttaggccccaattagaagataac 65
Query: 81 tatacaacttactactttccctgg 104
|||||||| |||||||||||||||
Sbjct: 66 tatacaacctactactttccctgg 89
>RF00027;let-7;ABRQ01114151.1/10843-10755 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 137 bits (69), Expect = 4e-32
Identities = 84/89 (94%)
Strand = Plus / Plus
Query: 16 ccagggtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaag 75
||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||
Sbjct: 1 ccagggtgaggtagtaagttgtattgttgctgggtagagattttaggccccaattagaag 60
Query: 76 ataactatacaacttactactttccctgg 104
||||||||||||| |||||||||||||||
Sbjct: 61 ataactatacaacctactactttccctgg 89
>RF00027;let-7;ABVD01531403.1/405-317 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 89
Score = 129 bits (65), Expect = 9e-30
Identities = 80/85 (94%)
Strand = Plus / Plus
Query: 19 gggtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagata 78
||||||||||||||||||||||||| |||| ||||||| ||||||||||||| |||||||
Sbjct: 4 gggtgaggtagtaagttgtattgttatgggatagggattttaggccccaattggaagata 63
Query: 79 actatacaacttactactttccctg 103
|| ||||||||||||||||||||||
Sbjct: 64 accatacaacttactactttccctg 88
>RF00027;let-7;AAPE01289140.1/8994-8905 59463:Myotis lucifugus
(little brown bat)
Length = 90
Score = 121 bits (61), Expect = 2e-27
Identities = 83/88 (94%), Gaps = 3/88 (3%)
Strand = Plus / Plus
Query: 19 gggtgaggtagtaagttgtattgttgtg--gggtagggatattaggccccaattagaaga 76
|||||||||||||||||||||||||||| |||||||||| | |||||||||| ||||||
Sbjct: 4 gggtgaggtagtaagttgtattgttgtgtggggtagggatttaaggccccaat-agaaga 62
Query: 77 taactatacaacttactactttccctgg 104
||||||||||||||||||||||||||||
Sbjct: 63 taactatacaacttactactttccctgg 90
>RF00027;let-7;AAWZ01028874.1/2915-3002 28377:Anolis carolinensis
(green anole)
Length = 88
Score = 103 bits (52), Expect = 5e-22
Identities = 77/84 (91%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 19 gggtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagata 78
|||||||||||||||||||||||||||||||||||||| || ||||||| | |||||
Sbjct: 4 gggtgaggtagtaagttgtattgttgtggggtagggat-ttgtgccccaaatcagagata 62
Query: 79 actatacaacttactactttccct 102
||||||||||||||||||||||||
Sbjct: 63 actatacaacttactactttccct 86
>RF00027;let-7;AAPN01318002.1/36628-36717 9258:Ornithorhynchus
anatinus (platypus)
Length = 90
Score = 85.7 bits (43), Expect = 1e-16
Identities = 74/82 (90%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 22 tgaggtagtaagttgtattgttgtggggtagggatat--taggccccaattagaagataa 79
||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||
Sbjct: 7 tgaggtagtaagttgtattgttgtggggtagggatttcttttgccccaattagc-gataa 65
Query: 80 ctatacaacttactactttccc 101
|||||||| |||||||||||||
Sbjct: 66 ctatacaatttactactttccc 87
>RF00027;let-7;CAAB01003893.1/10262-10170 31033:Takifugu rubripes
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 20 ggtgaggtagtaagttgtattgttgtgggg 49
|||||||||||||||||| |||||||||||
Sbjct: 5 ggtgaggtagtaagttgtgttgttgtgggg 34
>RF00027;let-7;AAPN01341034.1/3404-3318 9258:Ornithorhynchus
anatinus (platypus)
Length = 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 62 gccccaattagaagataactatacaacttactactttccctgg 104
|||||||| |||||||||||||||| | |||| | ||||||||
Sbjct: 45 gccccaatcagaagataactatacagcctactgccttccctgg 87
>RF00027;let-7;AANH01002616.1/64077-64170 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 20 ggtgaggtagtaagttgtattgttgtggggt 50
|||||||||||| ||||| ||||||||||||
Sbjct: 5 ggtgaggtagtatgttgtgttgttgtggggt 35
>RF00027;let-7;BX664745.13/143600-143510 7955:Danio rerio
(zebrafish)
Length = 91
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 ggtgaggtagtaagttgtattgttgt 45
|||||||||||||||||| |||||||
Sbjct: 5 ggtgaggtagtaagttgtgttgttgt 30
>RF00027;let-7;CAAB01000053.1/115251-115164 31033:Takifugu
rubripes
Length = 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 ggtgaggtagtaagttgtattgttgt 45
|||||||||||||||||| |||||||
Sbjct: 5 ggtgaggtagtaagttgtgttgttgt 30
>RF00027;let-7;BAAF04002393.1/17587-17677 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 ggtgaggtagtaagttgtattgttgt 45
|||||||||||||||||| |||||||
Sbjct: 5 ggtgaggtagtaagttgtgttgttgt 30
