miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00129;mir-103;AAGU02403797.1/4408-4485 9785:Loxodonta africana
(African savanna elephant)
Length = 78
Score = 123 bits (62), Expect = 3e-28
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 1 tcatagccctgtacaatgctgcttgacctgaatgctacaaggcagcactgtaaagaagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 tcatagccctgtacaatgctgcttgacctgaatgctacaaggcagcactgtaaagaagct 11
Query: 61 ga 62
||
Sbjct: 10 ga 9
>RF00129;mir-103;AADN02048857.1/398-321 9031:Gallus gallus
(chicken)
Length = 78
Score = 99.6 bits (50), Expect = 4e-21
Identities = 59/62 (95%)
Strand = Plus / Minus
Query: 1 tcatagccctgtacaatgctgcttgacctgaatgctacaaggcagcactgtaaagaagct 60
||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||
Sbjct: 70 tcatagccctgtacaatgctgcttgacatgaacgcaacaaggcagcactgtaaagaagct 11
Query: 61 ga 62
||
Sbjct: 10 ga 9
>RF00129;mir-103;AAVX01197460.1/556-479 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 91.7 bits (46), Expect = 9e-19
Identities = 58/62 (93%)
Strand = Plus / Minus
Query: 1 tcatagccctgtacaatgctgcttgacctgaatgctacaaggcagcactgtaaagaagct 60
|||||||||||||||||||||||||| | | |||||||||| ||||||||||||||||||
Sbjct: 70 tcatagccctgtacaatgctgcttgatccggatgctacaagtcagcactgtaaagaagct 11
Query: 61 ga 62
||
Sbjct: 10 ga 9
>RF00129;mir-103;AADN02027745.1/21215-21292 9031:Gallus gallus
(chicken)
Length = 78
Score = 79.8 bits (40), Expect = 3e-15
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 3 atagccctgtacaatgctgcttgacctgaatgctacaaggcagcactgtaaagaagctga 62
|||||||||||||||||||||||| || |||| |||||||| |||||||||||||||||
Sbjct: 68 atagccctgtacaatgctgcttgaactccatgccacaaggcaacactgtaaagaagctga 9
>RF00129;mir-103;AADN02035922.1/14217-14140 9031:Gallus gallus
(chicken)
Length = 78
Score = 77.8 bits (39), Expect = 1e-14
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 1 tcatagccctgtacaatgctgcttgacctgaatgctacaaggcagcactgtaaagaagc 59
|||||||||||||||||||||||||| | |||| |||||||||||||||||||||||
Sbjct: 70 tcatagccctgtacaatgctgcttgatccatatgcaacaaggcagcactgtaaagaagc 12
>RF00129;mir-103;AAVX01541574.1/765-688 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 73.8 bits (37), Expect = 2e-13
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 3 atagccctgtacaatgctgcttgacctgaatgctacaaggcagcactgtaaagaagc 59
|||||||||||||||||||||||| || | ||||||||||| ||||||||||||||
Sbjct: 68 atagccctgtacaatgctgcttgatctccaagctacaaggcaacactgtaaagaagc 12
>RF00129;mir-103;ABRO01336156.1/1674-1751 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 78
Score = 69.9 bits (35), Expect = 3e-12
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 1 tcatagccctgtacaatgctgcttgacctgaatgctacaaggcagcactgtaaagaagc 59
|||||||||||||||||||||||||| | |||| |||||||||||||||| ||||||
Sbjct: 70 tcatagccctgtacaatgctgcttgatccacatgcaacaaggcagcactgtagagaagc 12
>RF00129;mir-103;AAVX01046194.1/322-245 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 69.9 bits (35), Expect = 3e-12
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 1 tcatagccctgtacaatgctgcttgacctgaatgctacaaggcagcactgtaaagaagc 59
|||||||||||||||||||||||||| || | | |||||||||||||||||||||||
Sbjct: 70 tcatagccctgtacaatgctgcttgatcttcacgtcacaaggcagcactgtaaagaagc 12
>RF00129;mir-103;BAAE01010024.1/828-751 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 67.9 bits (34), Expect = 1e-11
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 3 atagccctgtacaatgctgcttgacctgaatgctacaaggcagcactgtaaagaagct 60
|||||||||||||||||||||||| | |||| |||||||| |||||||||||||||
Sbjct: 68 atagccctgtacaatgctgcttgatcgccatgccacaaggcaacactgtaaagaagct 11
>RF00129;mir-103;BX323842.8/48404-48481 7955:Danio rerio
(zebrafish)
Length = 78
Score = 60.0 bits (30), Expect = 3e-09
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 1 tcatagccctgtacaatgctgcttgacctgaatgctacaaggcagcactgtaaagaagct 60
|||||||||||||||||||||||||| | || | |||||||||||| ||||||| |||
Sbjct: 70 tcatagccctgtacaatgctgcttgatccagattccacaaggcagcaccgtaaagaggct 11
Query: 61 ga 62
||
Sbjct: 10 ga 9
>RF00129;mir-103;AANH01004124.1/31115-31038 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 60.0 bits (30), Expect = 3e-09
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 1 tcatagccctgtacaatgctgcttgacctgaatgctacaaggcagcactgtaaagaagct 60
|||||||||||||||||||||||||| | | || |||||||||||| ||||||| |||
Sbjct: 70 tcatagccctgtacaatgctgcttgatcgagacgccacaaggcagcaccgtaaagaggct 11
Query: 61 ga 62
||
Sbjct: 10 ga 9
>RF00129;mir-103;AANH01006686.1/13404-13327 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 58.0 bits (29), Expect = 1e-08
Identities = 52/57 (91%), Gaps = 2/57 (3%)
Strand = Plus / Minus
Query: 1 tcatagccctgtacaatgctgcttg-acctgaatgctacaaggcagcactgtaaaga 56
||||||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct: 70 tcatagccctgtacaatgctgcttgaacctg-atcagacaaggcagcactgtaaaga 15
>RF00129;mir-103;BX511087.12/72494-72571 7955:Danio rerio
(zebrafish)
Length = 78
Score = 54.0 bits (27), Expect = 2e-07
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 5 agccctgtacaatgctgcttgacctgaatgctacaaggcagcactgtaaagaagc 59
|||||||||||||||||||||| | | ||||||||||| ||||||| ||||||
Sbjct: 66 agccctgtacaatgctgcttgatcaccaggctacaaggcaacactgtagagaagc 12
>RF00129;mir-103;CT573279.9/199469-199546 7955:Danio rerio
(zebrafish)
Length = 78
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 1 tcatagccctgtacaatgctgcttga 26
||||||||||||||||||||||||||
Sbjct: 70 tcatagccctgtacaatgctgcttga 45
>RF00129;mir-103;BAAE01256445.1/2223-2146 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 1 tcatagccctgtacaatgctgcttga 26
||||||||||||||||||||||||||
Sbjct: 70 tcatagccctgtacaatgctgcttga 45
>RF00129;mir-103;BAAF04068432.1/1846-1923 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 1 tcatagccctgtacaatgctgcttga 26
||||||||||||||||||||||||||
Sbjct: 70 tcatagccctgtacaatgctgcttga 45
