miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00051;mir-17;ABRP01096430.1/2803-2886 132908:Pteropus vampyrus
(large flying fox)
Length = 84
Score = 147 bits (74), Expect = 2e-35
Identities = 80/82 (97%)
Strand = Plus / Plus
Query: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgt 60
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2 cctgctggggctaaagtgctgacagtgcagatagtgatcctctccgtgctaccgcactgt 61
Query: 61 gggtacttgctgctccagcagg 82
||||||||||||||||||||||
Sbjct: 62 gggtacttgctgctccagcagg 83
>RF00051;mir-17;ABRQ01185186.1/4173-4256 9813:Procavia capensis
(cape rock hyrax)
Length = 84
Score = 119 bits (60), Expect = 6e-27
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 5 ccggggctaaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgtgggt 64
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 6 ccggggttaaagtgctgacagtgcagatagtggtcctctgtgtgctaccgcactgtgggt 65
Query: 65 acttgctgctcc 76
||||||||||||
Sbjct: 66 acttgctgctcc 77
>RF00051;mir-17;AAEX02011501.1/32111-32192 9615:Canis lupus
familiaris (dog)
Length = 82
Score = 117 bits (59), Expect = 2e-26
Identities = 77/82 (93%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgt 60
|||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 2 cctgccggtgctaaagtgctgacagtgcagatagcggtcctc--cgtgctaccgcactgt 59
Query: 61 gggtacttgctgctccagcagg 82
|||||||||||||||| |||||
Sbjct: 60 gggtacttgctgctccggcagg 81
