miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00239;mir-124;AAVX01582238.1/229-149 7868:Callorhinchus milii
          (ghost shark)
          Length = 81

 Score =  121 bits (61), Expect = 2e-27
 Identities = 67/69 (97%)
 Strand = Plus / Plus

                                                                      
Query: 10 ctctgcgtgttcacagcggaccttgatttaatgtctatacaattaaggcacgcggtgaat 69
          |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 7  ctctccgtgttcacagcggaccttgatttaatgtttatacaattaaggcacgcggtgaat 66

                   
Query: 70 gccaagaga 78
          |||||||||
Sbjct: 67 gccaagaga 75




>RF00239;mir-124;BX324109.8/64997-64917 7955:Danio rerio
          (zebrafish)
          Length = 81

 Score =  117 bits (59), Expect = 2e-26
 Identities = 68/71 (95%)
 Strand = Plus / Plus

                                                                      
Query: 10 ctctgcgtgttcacagcggaccttgatttaatgtctatacaattaaggcacgcggtgaat 69
          |||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 7  ctctgcgtgttcacggcggaccttgatttaatatccatacaattaaggcacgcggtgaat 66

                     
Query: 70 gccaagagagg 80
          |||||||||||
Sbjct: 67 gccaagagagg 77




>RF00239;mir-124;AAWZ01017180.1/15233-15154 28377:Anolis
          carolinensis (green anole)
          Length = 80

 Score =  113 bits (57), Expect = 4e-25
 Identities = 67/69 (97%), Gaps = 1/69 (1%)
 Strand = Plus / Plus

                                                                      
Query: 9  cctctgcgtgttcacagcggaccttgatttaatgtctatacaattaaggcacgcggtgaa 68
          ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 6  cctctccgtgttcacagcggaccttgatttaatgtc-atacaattaaggcacgcggtgaa 64

                   
Query: 69 tgccaagag 77
          |||||||||
Sbjct: 65 tgccaagag 73




>RF00239;mir-124;BAAF04060426.1/3450-3529 8090:Oryzias latipes
          (Japanese medaka)
          Length = 80

 Score =  113 bits (57), Expect = 4e-25
 Identities = 67/69 (97%), Gaps = 1/69 (1%)
 Strand = Plus / Plus

                                                                      
Query: 10 ctctgcgtgttcacagcggaccttgatttaatgtctatacaattaaggcacgcggtgaat 69
          |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 7  ctctccgtgttcacagcggaccttgatttaatgtct-tacaattaaggcacgcggtgaat 65

                   
Query: 70 gccaagaga 78
          |||||||||
Sbjct: 66 gccaagaga 74




>RF00239;mir-124;AAIY01443585.1/551-630 9371:Echinops telfairi
          (small Madagascar hedgehog)
          Length = 80

 Score =  109 bits (55), Expect = 6e-24
 Identities = 62/63 (98%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                      
Query: 15 cgtgttcacagcggaccttgatttaatgtctatacaattaaggcacgcggtgaatgccaa 74
          |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagcggaccttgatttaatgtc-atacaattaaggcacgcggtgaatgccaa 70

             
Query: 75 gag 77
          |||
Sbjct: 71 gag 73




>RF00239;mir-124;BX511178.6/169756-169675 7955:Danio rerio
          (zebrafish)
          Length = 82

 Score =  107 bits (54), Expect = 2e-23
 Identities = 64/66 (96%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                      
Query: 15 cgtgttcacagcggaccttgatttaa-tgtctatacaattaaggcacgcggtgaatgcca 73
          |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcca 71

                
Query: 74 agagag 79
          ||||||
Sbjct: 72 agagag 77




>RF00239;mir-124;BAAF04105842.1/7834-7753 8090:Oryzias latipes
          (Japanese medaka)
          Length = 82

 Score =  107 bits (54), Expect = 2e-23
 Identities = 64/66 (96%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                      
Query: 15 cgtgttcacagcggaccttgatttaa-tgtctatacaattaaggcacgcggtgaatgcca 73
          |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcca 71

                
Query: 74 agagag 79
          ||||||
Sbjct: 72 agagag 77




>RF00239;mir-124;AAWZ01025406.1/2960-3041 28377:Anolis
          carolinensis (green anole)
          Length = 82

 Score =  103 bits (52), Expect = 4e-22
 Identities = 65/68 (95%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                      
Query: 10 ctctgcgtgttcacagcggaccttgattt-aatgtctatacaattaaggcacgcggtgaa 68
          ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 7  ctctgcgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaa 66

                  
Query: 69 tgccaaga 76
          ||| ||||
Sbjct: 67 tgctaaga 74




>RF00239;mir-124;AANH01003936.1/69725-69645 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 81

 Score =  103 bits (52), Expect = 4e-22
 Identities = 61/64 (95%)
 Strand = Plus / Plus

                                                                      
Query: 16 gtgttcacagcggaccttgatttaatgtctatacaattaaggcacgcggtgaatgccaag 75
          |||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 13 gtgttcacagtggaccttgatttaatttcaatacaattaaggcacgcggtgaatgccaag 72

              
Query: 76 agag 79
          ||||
Sbjct: 73 agag 76




>RF00239;mir-124;AANH01002585.1/13981-13901 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 81

 Score = 91.7 bits (46), Expect = 1e-18
 Identities = 61/66 (92%)
 Strand = Plus / Plus

                                                                      
Query: 15 cgtgttcacagcggaccttgatttaatgtctatacaattaaggcacgcggtgaatgccaa 74
          ||||||||| ||||||||||||||| |  | |||||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacggcggaccttgatttattagcaatacaattaaggcacgcggtgaatgccaa 71

                
Query: 75 gagagg 80
          ||||||
Sbjct: 72 gagagg 77




>RF00239;mir-124;AAWZ01041803.1/11566-11646 28377:Anolis
          carolinensis (green anole)
          Length = 81

 Score = 85.7 bits (43), Expect = 8e-17
 Identities = 58/63 (92%)
 Strand = Plus / Plus

                                                                      
Query: 15 cgtgttcacagcggaccttgatttaatgtctatacaattaaggcacgcggtgaatgccaa 74
          ||||||||||| |||||||||||| ||||  | |||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagtggaccttgatttcatgtggacacaattaaggcacgcggtgaatgccaa 71

             
Query: 75 gag 77
          |||
Sbjct: 72 gag 74




>RF00239;mir-124;BX248497.11/64645-64566 7955:Danio rerio
          (zebrafish)
          Length = 80

 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 55/60 (91%), Gaps = 1/60 (1%)
 Strand = Plus / Plus

                                                                      
Query: 15 cgtgttcacagcggaccttgatttaatgtctatacaattaaggcacgcggtgaatgccaa 74
          ||||||||||| ||||||||||||| ||| | | ||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagtggaccttgatttattgtattt-caattaaggcacgcggtgaatgccaa 70




>RF00239;mir-124;AAQQ01613377.1/480-556 43179:Spermophilus
          tridecemlineatus (thirteen-lined ground squirrel)
          Length = 77

 Score = 69.9 bits (35), Expect = 5e-12
 Identities = 58/63 (92%), Gaps = 2/63 (3%)
 Strand = Plus / Plus

                                                                      
Query: 5  ggcccctctgcgtgttcacagcggaccttgatttaatgtctatacaattaaggcacgcgg 64
          ||||||||||||||| ||||||||||| |||||| |||||||||| ||| ||||||||||
Sbjct: 2  ggcccctctgcgtgtccacagcggacc-tgattttatgtctatac-atttaggcacgcgg 59

             
Query: 65 tga 67
          |||
Sbjct: 60 tga 62




>RF00239;mir-124;BAAE01194669.1/2121-2201 8090:Oryzias latipes
          (Japanese medaka)
          Length = 81

 Score = 65.9 bits (33), Expect = 8e-11
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 48 acaattaaggcacgcggtgaatgccaagagagg 80
          |||||||||||||||||||||||||||||||||
Sbjct: 45 acaattaaggcacgcggtgaatgccaagagagg 77




>RF00239;mir-124;AADN02043986.1/2081-2002 9031:Gallus gallus
          (chicken)
          Length = 80

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 53/59 (89%), Gaps = 1/59 (1%)
 Strand = Plus / Plus

                                                                     
Query: 16 gtgttcacagcggaccttgatttaatgtctatacaattaaggcacgcggtgaatgccaa 74
          |||||||| || ||||||||||||||||| | || |||||||||||| |||||||||||
Sbjct: 13 gtgttcactgcagaccttgatttaatgtc-acacgattaaggcacgcagtgaatgccaa 70




>RF00239;mir-124;BAAF04094312.1/9605-9526 8090:Oryzias latipes
          (Japanese medaka)
          Length = 80

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 49 caattaaggcacgcggtgaatgccaagagag 79
          |||||||||||||||||||||||||||||||
Sbjct: 45 caattaaggcacgcggtgaatgccaagagag 75




>RF00239;mir-124;ABGA01235197.1/1392-1331 9601:Pongo abelii
          (Sumatran orangutan)
          Length = 62

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 55/61 (90%), Gaps = 2/61 (3%)
 Strand = Plus / Plus

                                                                      
Query: 15 cgtgttcacagcggaccttgatttaa-tgtctatacaattaaggcacgcggtgaatgcca 73
          ||||||||||||||  | |||||||| |||| ||||||| ||||||||||||||||||||
Sbjct: 3  cgtgttcacagcgggacctgatttaaatgtccatacaat-aaggcacgcggtgaatgcca 61

           
Query: 74 a 74
          |
Sbjct: 62 a 62




>RF00239;mir-124;AAGJ02120869.1/14315-14397
          7668:Strongylocentrotus purpuratus
          Length = 83

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 48 acaattaaggcacgcggtgaatgccaag 75
          ||||||||||||||||||||||||||||
Sbjct: 46 acaattaaggcacgcggtgaatgccaag 73




>RF00239;mir-124;ABEP02005892.1/41262-41341 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 80

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 49 caattaaggcacgcggtgaatgccaaga 76
          ||||||||||||||||||||||||||||
Sbjct: 45 caattaaggcacgcggtgaatgccaaga 72




>RF00239;mir-124;AC189672.3/51235-51156 6334:Trichinella spiralis
          Length = 80

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 50 aattaaggcacgcggtgaatgccaag 75
          ||||||||||||||||||||||||||
Sbjct: 46 aattaaggcacgcggtgaatgccaag 71




>RF00239;mir-124;ABKE01011138.1/1481-1398 54126:Pristionchus
          pacificus
          Length = 84

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 53 taaggcacgcggtgaatgccaagaga 78
          ||||||||||||||||||||||||||
Sbjct: 53 taaggcacgcggtgaatgccaagaga 78




>RF00239;mir-124;AAVX01290765.1/186-107 7868:Callorhinchus milii
          (ghost shark)
          Length = 80

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 56/65 (86%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                      
Query: 16 gtgttcacagcggaccttgatttaatgtctatacaattaaggcacgcggtgaatgccaag 75
          |||||||  ||||| |||||||||||||   |||||||||||||| |||||||||| |||
Sbjct: 13 gtgttcatggcggatcttgatttaatgtgg-tacaattaaggcacacggtgaatgctaag 71

               
Query: 76 agagg 80
           ||||
Sbjct: 72 ggagg 76




>RF00239;mir-124;AAZO01006175.1/169136-169059 121224:Pediculus
          humanus corporis (human body louse)
          Length = 78

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 53 taaggcacgcggtgaatgccaagag 77
          |||||||||||||||||||||||||
Sbjct: 47 taaggcacgcggtgaatgccaagag 71




>RF00239;mir-124;AADK01010415.1/6990-7072 7091:Bombyx mori
          (domestic silkworm)
          Length = 83

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 53 taaggcacgcggtgaatgccaagag 77
          |||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaagag 76




>RF00239;mir-124;AADG05004246.1/190424-190509 7460:Apis mellifera
          (honey bee)
          Length = 86

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 53 taaggcacgcggtgaatgccaagag 77
          |||||||||||||||||||||||||
Sbjct: 55 taaggcacgcggtgaatgccaagag 79




>RF00239;mir-124;AAWU01000987.1/43993-44075 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 83

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 53 taaggcacgcggtgaatgccaagag 77
          |||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaagag 76




>RF00239;mir-124;AAGE02000531.1/21424-21342 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 83

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 53 taaggcacgcggtgaatgccaagag 77
          |||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaagag 76




>RF00239;mir-124;AAPT01021775.1/703690-703766 7222:Drosophila
          grimshawi
          Length = 77

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 53 taaggcacgcggtgaatgccaagag 77
          |||||||||||||||||||||||||
Sbjct: 46 taaggcacgcggtgaatgccaagag 70




>RF00239;mir-124;AANI01016269.1/7414-7490 7244:Drosophila virilis
          Length = 77

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 53 taaggcacgcggtgaatgccaagag 77
          |||||||||||||||||||||||||
Sbjct: 46 taaggcacgcggtgaatgccaagag 70




>RF00239;mir-124;AAJJ01000069.1/11639-11717 7070:Tribolium
          castaneum (red flour beetle)
          Length = 79

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 53 taaggcacgcggtgaatgccaagag 77
          |||||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaagag 72




>RF00239;mir-124;ABJB010184237.1/16835-16915 6945:Ixodes
          scapularis (black-legged tick)
          Length = 81

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 53 taaggcacgcggtgaatgccaagag 77
          |||||||||||||||||||||||||
Sbjct: 50 taaggcacgcggtgaatgccaagag 74




>RF00239;mir-124;ABLF01025804.1/1243-1161 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 83

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 53 taaggcacgcggtgaatgccaaga 76
          ||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaaga 75




>RF00239;mir-124;AAWT01083931.1/8247-8331 79327:Schmidtea
          mediterranea
          Length = 85

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 52 ttaaggcacgcggtgaatgcca 73
          ||||||||||||||||||||||
Sbjct: 53 ttaaggcacgcggtgaatgcca 74




>RF00239;mir-124;ABLA01036893.1/860-781 51029:Heterodera glycines
          Length = 80

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 53 taaggcacgcggtgaatgccaa 74
          ||||||||||||||||||||||
Sbjct: 49 taaggcacgcggtgaatgccaa 70




>RF00239;mir-124;AACT01007791.1/10034-10112 51511:Ciona savignyi
          Length = 79

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 53 taaggcacgcggtgaatgccaa 74
          ||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69




>RF00239;mir-124;AACT01004897.1/11101-11179 51511:Ciona savignyi
          Length = 79

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 53 taaggcacgcggtgaatgccaa 74
          ||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69




>RF00239;mir-124;AABS01000310.1/18792-18714 7719:Ciona
          intestinalis
          Length = 79

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 53 taaggcacgcggtgaatgccaa 74
          ||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69




>RF00239;mir-124;AABS01000310.1/18932-18854 7719:Ciona
          intestinalis
          Length = 79

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 53 taaggcacgcggtgaatgccaa 74
          ||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69