miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30236_ptr-mir-144:mirbase
Length = 86
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 tggggccctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggggccctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtata 60
Query: 61 gatgatgtactagtccgggcaccc 84
||||||||||||||||||||||||
Sbjct: 61 gatgatgtactagtccgggcaccc 84
>27749_mml-mir-144:mirbase
Length = 86
Score = 163 bits (82), Expect = 2e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 tggggccctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtata 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 tggggccctggctgggatatcatcatatactgtaagtttgtgatgagacactacagtata 60
Query: 61 gatgatgtactagtccgggcaccccc 86
||||||||||||||||||||||||||
Sbjct: 61 gatgatgtactagtccgggcaccccc 86
>28215_mne-mir-144:mirbase
Length = 86
Score = 163 bits (82), Expect = 2e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 tggggccctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtata 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 tggggccctggctgggatatcatcatatactgtaagtttgtgatgagacactacagtata 60
Query: 61 gatgatgtactagtccgggcaccccc 86
||||||||||||||||||||||||||
Sbjct: 61 gatgatgtactagtccgggcaccccc 86
>30848_ppy-mir-144:mirbase
Length = 86
Score = 163 bits (82), Expect = 2e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 tggggccctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggggccctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtata 60
Query: 61 gatgatgtactagtccgggcaccccc 86
||||||||||||||| ||||||||||
Sbjct: 61 gatgatgtactagtctgggcaccccc 86
>30099_ppa-mir-144:mirbase
Length = 86
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 tggggccctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggggccctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtata 60
Query: 61 gatgatgtactagtccgggcaccc 84
|||||||||||| |||||||||||
Sbjct: 61 gatgatgtactactccgggcaccc 84
>32750_rno-mir-144:mirbase
Length = 83
Score = 133 bits (67), Expect = 2e-32
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 3 gggccctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtataga 62
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 gggccttggctgggatatcatcatatactgtaagtttgtgatgagacactacagtataga 60
Query: 63 tgatgtactagtccgggcacccc 85
||||||||||||| ||| |||||
Sbjct: 61 tgatgtactagtctgggtacccc 83
>27044_eca-mir-144:mirbase
Length = 66
Score = 131 bits (66), Expect = 9e-32
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 10 ggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgta 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgta 60
Query: 70 ctagtc 75
||||||
Sbjct: 61 ctagtc 66
>33230_bta-mir-144:mirbase
Length = 84
Score = 129 bits (65), Expect = 3e-31
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 3 gggccctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtataga 62
|||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 1 gggccctgactgggatatcatcatatactgtaagtttgcaacgagacactacagtataga 60
Query: 63 tgatgtactagtccggg 79
|||||||||||||||||
Sbjct: 61 tgatgtactagtccggg 77
>31501_oan-mir-144:mirbase
Length = 135
Score = 123 bits (62), Expect = 2e-29
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 2 ggggccctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatag 61
||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 37 ggggccctggcggggatatcatcgtatactgtaagtttgctatgagacactacagtatag 96
Query: 62 atgatgtactagtccggg 79
|||||||||||| |||||
Sbjct: 97 atgatgtactagcccggg 114
>31877_mmu-mir-144:mirbase
Length = 66
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 10 ggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgta 69
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 ggctgggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgta 60
Query: 70 ctagtc 75
||||||
Sbjct: 61 ctagtc 66
>27392_mdo-mir-144:mirbase
Length = 85
Score = 107 bits (54), Expect = 1e-24
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 2 ggggccctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatag 61
||||||| ||| ||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 2 ggggcccaggccgggatatcatcgtatactgtaagtttgcaatgagacactacagtatag 61
Query: 62 atgatgtact 71
||||||||||
Sbjct: 62 atgatgtact 71
>26718_cfa-mir-144:mirbase
Length = 60
Score = 93.7 bits (47), Expect = 2e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 15 ggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgtactag 73
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 2 ggatatcatcatatactgtaagtttgcgacaagatactacagtatagatgatgtactag 60
>25964_gga-mir-144:mirbase
Length = 85
Score = 89.7 bits (45), Expect = 3e-19
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 15 ggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgtact 71
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 17 ggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgtact 73
>26474_tgu-mir-144:mirbase
Length = 70
Score = 89.7 bits (45), Expect = 3e-19
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 15 ggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgtact 71
|||||||||| ||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 4 ggatatcatcgtatactgtaagttggctatgagacactacagtatagatgatgtact 60
>25793_xtr-mir-144:mirbase
Length = 62
Score = 87.7 bits (44), Expect = 1e-18
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 13 tgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgtacta 72
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 3 tgggatatcatcatatactgtaagtttgttttaagacactacagtatagatgatgtacta 62
>34316_dre-mir-144:mirbase
Length = 89
Score = 61.9 bits (31), Expect = 7e-11
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 15 ggatatcatcatatactgtaagtttgcgat-gagacactacagtatagatgatgtacta 72
|||||||||| ||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 13 ggatatcatcgtatactgtaagttcattattgagacactacagtatagatgatgtacta 71
>34605_fru-mir-144:mirbase
Length = 73
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 45 gagacactacagtatagatgatgtacta 72
||||||||||||||||||||||||||||
Sbjct: 40 gagacactacagtatagatgatgtacta 67
>34752_tni-mir-144:mirbase
Length = 74
Score = 54.0 bits (27), Expect = 2e-08
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 15 ggatatcatcatatactgtaagtttgcgat-gagacactacagtatagatgatgtacta 72
|||||||||| |||||||||||||| | | ||||||||||||||||||||||||||
Sbjct: 10 ggatatcatcttatactgtaagtttaataaagtgacactacagtatagatgatgtacta 68
