miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01059;mir-598;AAPN01193406.1/1280-1190 9258:Ornithorhynchus
anatinus (platypus)
Length = 91
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 202 gagtggtggtggtgatgatgatgatg 227
||||||||||||||||||||||||||
Sbjct: 13 gagtggtggtggtgatgatgatgatg 38
>RF01059;mir-598;AABR04008870.1/32326-32414 10116:Rattus norvegicus
(Norway rat)
Length = 89
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 204 gtggtggtggtgatgatgatgatgat 229
||||||||||||||||||||||||||
Sbjct: 21 gtggtggtggtgatgatgatgatgat 46
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 204 gtggtggtggtgatgatgatgatgat 229
|||||||||||| |||||||||||||
Sbjct: 18 gtggtggtggtggtgatgatgatgat 43
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 204 gtggtggtggtgatgatgatgatgat 229
||||||||| ||||||||||||||||
Sbjct: 24 gtggtggtgatgatgatgatgatgat 49
>RF01059;mir-598;AASC02003775.1/749-654 6500:Aplysia californica
(California sea hare)
Length = 96
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 205 tggtggtggtgatgatgatgatgat 229
|||||||||||||||||||||||||
Sbjct: 22 tggtggtggtgatgatgatgatgat 46
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 204 gtggtggtggtgatgatgatgatgat 229
||||||||| ||||||||||||||||
Sbjct: 24 gtggtggtgatgatgatgatgatgat 49
>RF01059;mir-598;AASC02030857.1/14109-14009 6500:Aplysia californica
(California sea hare)
Length = 101
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 205 tggtggtggtgatgatgatgatgat 229
|||||||||||||||||||||||||
Sbjct: 101 tggtggtggtgatgatgatgatgat 77
>RF01059;mir-598;EU527977.1/47-137 13286:Theromyzon tessulatum
Length = 91
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 205 tggtggtggtgatgatgatgatgat 229
|||||||||||||||||||||||||
Sbjct: 1 tggtggtggtgatgatgatgatgat 25
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 204 gtggtggtggtgatgatgatgatgat 229
||||||||| ||||||||||||||||
Sbjct: 3 gtggtggtgatgatgatgatgatgat 28
>RF01059;mir-598;AAGJ02133823.1/18536-18440 7668:Strongylocentrotus
purpuratus
Length = 97
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 208 tggtggtgatgatgatgatgattt 231
||||||||||||||||||||||||
Sbjct: 19 tggtggtgatgatgatgatgattt 42
>RF01059;mir-598;AAGJ02010476.1/10750-10885 7668:Strongylocentrotus
purpuratus
Length = 136
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 205 tggtggtggtgatgatgatgatga 228
||||||||||||||||||||||||
Sbjct: 19 tggtggtggtgatgatgatgatga 42
>RF01059;mir-598;AAQQ01282491.1/3271-3329 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 59
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 13 catcatcatcatcatcttcttctt 36
||||||||||||||||||||||||
Sbjct: 29 catcatcatcatcatcttcttctt 6
>RF01059;mir-598;AAHY01105911.1/400-306 10090:Mus musculus (house
mouse)
Length = 95
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 13 catcatcatcatcatcttcttctt 36
||||||||||||||||||||||||
Sbjct: 44 catcatcatcatcatcttcttctt 21
>RF01059;mir-598;AAWZ01006914.1/74932-75009 28377:Anolis
carolinensis (green anole)
Length = 78
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 13 catcatcatcatcatcttcttctt 36
||||||||||||||||||||||||
Sbjct: 29 catcatcatcatcatcttcttctt 6
>RF01059;mir-598;BX842696.13/67074-67012 7955:Danio rerio
(zebrafish)
Length = 63
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 13 catcatcatcatcatcttcttctt 36
||||||||||||||||||||||||
Sbjct: 29 catcatcatcatcatcttcttctt 6
>RF01059;mir-598;AAGE02027588.1/14413-14474 7159:Aedes aegypti
(yellow fever mosquito)
Length = 62
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 206 ggtggtggtgatgatgatgatgat 229
||||||||||||||||||||||||
Sbjct: 11 ggtggtggtgatgatgatgatgat 34
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 204 gtggtggtggtgatgatgatgatgat 229
||||||||| ||||||||||||||||
Sbjct: 12 gtggtggtgatgatgatgatgatgat 37
>RF01059;mir-598;AAQA01000022.1/38356-38474 6279:Brugia malayi
Length = 119
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 203 agtggtggtggtgatgatgatgatgat 229
||||||| |||||||||||||||||||
Sbjct: 5 agtggtgctggtgatgatgatgatgat 31
>RF01059;mir-598;AAQA01013501.1/820-912 6279:Brugia malayi
Length = 93
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 203 agtggtggtggtgatgatgatgatgat 229
||||||| |||||||||||||||||||
Sbjct: 8 agtggtgctggtgatgatgatgatgat 34
>RF01059;mir-598;AASC02058686.1/5316-5435 6500:Aplysia californica
(California sea hare)
Length = 120
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 205 tggtggtggtgatgatgatgatg 227
|||||||||||||||||||||||
Sbjct: 13 tggtggtggtgatgatgatgatg 35
>RF01059;mir-598;ABAV01015064.1/34591-34683 45351:Nematostella
vectensis (starlet sea anemone)
Length = 93
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 204 gtggtggtggtgatgatgatgat 226
|||||||||||||||||||||||
Sbjct: 15 gtggtggtggtgatgatgatgat 37
>RF01059;mir-598;AAFR03043215.1/1072-1016 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 57
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 13 catcatcatcatcatcttcttct 35
|||||||||||||||||||||||
Sbjct: 23 catcatcatcatcatcttcttct 1
>RF01059;mir-598;AAWZ01049713.1/1510-1420 28377:Anolis
carolinensis (green anole)
Length = 91
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 catcatcatcatcatcttcttct 35
|||||||||||||||||||||||
Sbjct: 69 catcatcatcatcatcttcttct 91
>RF01059;mir-598;CABF01035965.1/2342-2468 6182:Schistosoma japonicum
Length = 127
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 204 gtggtggtggtgatgatgatgatgat 229
|||||| |||||||||||||||||||
Sbjct: 15 gtggtgatggtgatgatgatgatgat 40
>RF01059;mir-598;AASC02059922.1/13482-13412 6500:Aplysia californica
(California sea hare)
Length = 71
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 204 gtggtggtggtgatgatgatgatgat 229
|||||| |||||||||||||||||||
Sbjct: 21 gtggtgatggtgatgatgatgatgat 46
>RF01059;mir-598;AASC02049543.1/3244-3339 6500:Aplysia californica
(California sea hare)
Length = 96
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 205 tggtggtggtgatgatgatgatgatt 230
|||||||| |||||||||||||||||
Sbjct: 25 tggtggtgatgatgatgatgatgatt 50
>RF01059;mir-598;AAGJ02038136.1/8727-8671 7668:Strongylocentrotus
purpuratus
Length = 57
Score = 44.1 bits (22), Expect = 9e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 caacatcatcatcatcatcttc 31
||||||||||||||||||||||
Sbjct: 32 caacatcatcatcatcatcttc 11
>RF01059;mir-598;AAGJ02145196.1/6269-6174 7668:Strongylocentrotus
purpuratus
Length = 96
Score = 44.1 bits (22), Expect = 9e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 204 gtggtggtggtgatgatgatga 225
||||||||||||||||||||||
Sbjct: 33 gtggtggtggtgatgatgatga 54
>RF01059;mir-598;ACBE01422427.1/2091-2211 9685:Felis catus (domestic
cat)
Length = 121
Score = 44.1 bits (22), Expect = 9e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 205 tggtggtggtgatgatgatgat 226
||||||||||||||||||||||
Sbjct: 7 tggtggtggtgatgatgatgat 28
>RF01059;mir-598;CABD01089460.1/2881-2794 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 88
Score = 44.1 bits (22), Expect = 9e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 208 tggtggtgatgatgatgatgat 229
||||||||||||||||||||||
Sbjct: 19 tggtggtgatgatgatgatgat 40
>RF01059;mir-598;AC134429.3/110743-110841 10090:Mus musculus (house
mouse)
Length = 99
Score = 44.1 bits (22), Expect = 9e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 204 gtggtggtggtgatgatgatga 225
||||||||||||||||||||||
Sbjct: 85 gtggtggtggtgatgatgatga 64
>RF01059;mir-598;AC151832.3/33309-33202 10090:Mus musculus (house
mouse)
Length = 108
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 204 gtggtggtggtgatgatgatgatgat 229
||||||||||||||||| ||||||||
Sbjct: 27 gtggtggtggtgatgataatgatgat 52
>RF01059;mir-598;AAWZ01000955.1/48418-48347 28377:Anolis
carolinensis (green anole)
Length = 72
Score = 44.1 bits (22), Expect = 9e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 205 tggtggtggtgatgatgatgat 226
||||||||||||||||||||||
Sbjct: 16 tggtggtggtgatgatgatgat 37
>RF01059;mir-598;AAWZ01027998.1/12372-12286 28377:Anolis
carolinensis (green anole)
Length = 87
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 204 gtggtggtggtgatgatgatgatgat 229
|||||| |||||||||||||||||||
Sbjct: 15 gtggtgatggtgatgatgatgatgat 40
>RF01059;mir-598;AAAB01008834.1/1385569-1385664 180454:Anopheles
gambiae str. PEST
Length = 96
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 204 gtggtggtggtgatgatgatgatgat 229
|||||||||| |||||||||||||||
Sbjct: 94 gtggtggtggggatgatgatgatgat 69
