miRNEST 2.0, an integrative microRNA resource :: BLAST
>47009_ath-miR396b:pmrd
Length = 135
Score = 61.9 bits (31), Expect = 8e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 73 tggaagctcaagaaagctgtgggaaaacatg 103
|||||||||||||||||||||||||||||||
Sbjct: 102 tggaagctcaagaaagctgtgggaaaacatg 132
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 gtcatgctattccacagctttcttgaactttctt 34
||||| || |||||||||||||||||||||||||
Sbjct: 2 gtcatacttttccacagctttcttgaactttctt 35
>51738_ptc-miR396e:pmrd
Length = 145
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 71 catggaagctcaagaaagctgtgggaaaacatgg 104
|||||||||||||||||||||||||| |||||||
Sbjct: 112 catggaagctcaagaaagctgtgggagaacatgg 145
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 gtcatgctattccacagctttcttgaactt 30
|||||||| |||||||||||||||||||||
Sbjct: 2 gtcatgcttttccacagctttcttgaactt 31
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 71 catggaagctcaagaaagctgtgggaaaacatg 103
|||||||||||||||||||||||||| ||||||
Sbjct: 33 catggaagctcaagaaagctgtgggagaacatg 1
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 3 catgctattccacagctttcttgaactt 30
|||||| |||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaactt 114
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 71 catggaagctcaagaaagctgtgggaaaacatg 103
|||||||||||||||||||||||||| ||||||
Sbjct: 33 catggaagctcaagaaagctgtgggagaacatg 1
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 3 catgctattccacagctttcttgaactt 30
|||||| |||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaactt 114
>51737_ptc-miR396d:pmrd
Length = 154
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 gtcatgctattccacagctttcttgaactttcttg 35
|||||||| ||||||||||||||||||||| ||||
Sbjct: 2 gtcatgcttttccacagctttcttgaacttccttg 36
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 71 catggaagctcaagaaagctgtgggaaaacatgg 104
||||||||||||||||||| |||||| |||||||
Sbjct: 121 catggaagctcaagaaagccgtgggagaacatgg 154
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 gtcatgctattccacagctttcttgaactt 30
||||||||||||||| ||||||||||||||
Sbjct: 1 gtcatgctattccacggctttcttgaactt 30
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 74 ggaagctcaagaaagctgtgggaaaacatgg 104
||||| ||||||||||||||| |||||||||
Sbjct: 71 ggaagttcaagaaagctgtggaaaaacatgg 101
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 10 ttccacagctttcttgaactt 30
|||||||||||||||||||||
Sbjct: 93 ttccacagctttcttgaactt 73
>48579_gma-miR396b:pmrd
Length = 126
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 gtcatgctattccacagctttcttgaactt 30
|||||||| |||||||||||||||||||||
Sbjct: 12 gtcatgcttttccacagctttcttgaactt 41
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 75 gaagctcaagaaagctgtggga 96
||||||||||||||||||||||
Sbjct: 86 gaagctcaagaaagctgtggga 107
>54868_vvi-miR396a:pmrd
Length = 116
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 gtcatgctattccacagctttcttgaact 29
|||||||| ||||||||||||||||||||
Sbjct: 5 gtcatgcttttccacagctttcttgaact 33
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 75 gaagctcaagaaagctgtggga 96
||||||||||||||||||||||
Sbjct: 84 gaagctcaagaaagctgtggga 105
>51736_ptc-miR396c:pmrd
Length = 102
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 2 tcatgctattccacagctttcttgaactt 30
|||||||||||||| ||||||||||||||
Sbjct: 102 tcatgctattccacggctttcttgaactt 74
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 74 ggaagctcaagaaagctgtgggaaaacatgg 104
||||| ||||||||||||||| |||||||||
Sbjct: 33 ggaagttcaagaaagctgtggaaaaacatgg 3
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaactt 30
|||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactt 31
>48374_bna-miR396a:pmrd
Length = 117
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaactttctt 34
|||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactttctt 25
>54869_vvi-miR396b:pmrd
Length = 108
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 3 catgctattccacagctttcttgaactt 30
|||||| |||||||||||||||||||||
Sbjct: 7 catgcttttccacagctttcttgaactt 34
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 75 gaagctcaagaaagctgtgggaaaacatgg 104
|||| ||||||||||||||||||| |||||
Sbjct: 76 gaagttcaagaaagctgtgggaaaccatgg 105
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 71 catggaagctcaagaaagctgtgggaaaacat 102
||||||||||||||||||| |||||| |||||
Sbjct: 32 catggaagctcaagaaagccgtgggagaacat 1
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 4 atgctattccacagctttcttgaactttcttg 35
||||| ||||||||||||||||||||| ||||
Sbjct: 148 atgcttttccacagctttcttgaacttccttg 117
>51564_pta-miR396:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 gtcatgctattccacagctttcttgaacttt 31
||||| || ||||||||||||||||||||||
Sbjct: 8 gtcatacttttccacagctttcttgaacttt 38
>48580_gma-miR396c:pmrd
Length = 117
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 4 atgctattccacagctttcttgaactt 30
||||| |||||||||||||||||||||
Sbjct: 15 atgcttttccacagctttcttgaactt 41
>48748_mtr-miR396a:pmrd
Length = 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 5 tgctattccacagctttcttgaactt 30
|||| |||||||||||||||||||||
Sbjct: 1 tgcttttccacagctttcttgaactt 26
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 75 gaagctcaagaaagctgtggga 96
||||||||||||||||||||||
Sbjct: 67 gaagctcaagaaagctgtggga 88
>46888_aqc-miR396b:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaacttt 31
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaacttt 22
>55078_zma-miR396g:pmrd
Length = 117
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaactt 30
|||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaactt 23
>55077_zma-miR396f:pmrd
Length = 166
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaactt 30
|||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaactt 23
>54487_sbi-miR396c:pmrd
Length = 162
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaactt 30
|||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactt 41
>48947_osa-miR396c:pmrd
Length = 141
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaactt 30
|||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactt 31
>55083_zma-miR396l:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaact 29
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55082_zma-miR396k:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaact 29
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55081_zma-miR396j:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaact 29
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55080_zma-miR396i:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaact 29
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55079_zma-miR396h:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaact 29
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55074_zma-miR396c:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaact 29
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55073_zma-miR396b:pmrd
Length = 136
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaact 29
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>55072_zma-miR396a:pmrd
Length = 137
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaact 29
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54871_vvi-miR396d:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaact 29
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54870_vvi-miR396c:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaact 29
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54645_sof-miR396:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaact 29
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54584_smo-miR396:pmrd
Length = 168
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 75 gaagctcaagaaagctgtgggaaa 98
|||| |||||||||||||||||||
Sbjct: 134 gaagttcaagaaagctgtgggaaa 157
>54486_sbi-miR396b:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaact 29
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54485_sbi-miR396a:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaact 29
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>52339_ptc-miRf10517-akr:pmrd
Length = 164
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 3 catgctattccacagctttcttgaactt 30
|||||| |||||| ||||||||||||||
Sbjct: 1 catgcttttccacggctttcttgaactt 28
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 76 aagctcaagaaagctgtgggaaaa 99
|||||||||||||| |||||||||
Sbjct: 137 aagctcaagaaagccgtgggaaaa 160
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaact 29
||||||||||||||||||||
Sbjct: 9 ttccacagctttcttgaact 28
>51740_ptc-miR396g:pmrd
Length = 168
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 3 catgctattccacagctttcttgaactt 30
|||||| |||||| ||||||||||||||
Sbjct: 4 catgcttttccacggctttcttgaactt 31
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 76 aagctcaagaaagctgtgggaaaa 99
|||||||||||||| |||||||||
Sbjct: 140 aagctcaagaaagccgtgggaaaa 163
>51735_ptc-miR396b:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaact 29
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51734_ptc-miR396a:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaact 29
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48946_osa-miR396b:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaact 29
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48945_osa-miR396a:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaact 29
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48680_lja-miR396:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaact 29
||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35
>48578_gma-miR396a:pmrd
Length = 140
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaact 29
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48508_ghr-miR396c:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaact 29
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48507_ghr-miR396b:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaact 29
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48485_gcl-miR396a:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 10 ttccacagctttcttgaact 29
||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaact 82
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaact 29
||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaact 37
>47008_ath-miR396a:pmrd
Length = 151
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaact 29
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46887_aqc-miR396a:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 ttccacagctttcttgaact 29
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
