miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00772;mir-328;CABD01007083.1/12516-12433 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 123 bits (62), Expect = 3e-28
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 14 caggaggggctcagggagaaagtgcatacagcccctggccctctctgcccttccgtcccc 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 caggaggggctcagggagaaagtgcatacagcccctggccctctctgcccttccgtcccc 73
Query: 74 tg 75
||
Sbjct: 74 tg 75
>RF00772;mir-328;AAFC03033115.1/3848-3931 9913:Bos taurus (cattle)
Length = 84
Score = 83.8 bits (42), Expect = 3e-16
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 14 caggaggggctcagggagaaagtgcatacagcccctggccctctctgcccttccgtcccc 73
||||||||||||||||||| |||| | | ||||||||||||||||||||||||||||||
Sbjct: 14 caggaggggctcagggagatagtgtgtgctgcccctggccctctctgcccttccgtcccc 73
Query: 74 tg 75
||
Sbjct: 74 tg 75
>RF00772;mir-328;CAAA01078944.1/1505-1422 10090:Mus musculus
(house mouse)
Length = 84
Score = 83.8 bits (42), Expect = 3e-16
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 14 caggaggggctcagggagaaagtgcatacagcccctggccctctctgcccttccgtcccc 73
||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 14 caggaggggctcacgcagaaagtatctacagcccctggccctctctgcccttccgtcccc 73
Query: 74 tg 75
||
Sbjct: 74 tg 75
>RF00772;mir-328;ABRO01179261.1/3503-3586 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 84
Score = 83.8 bits (42), Expect = 3e-16
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 14 caggaggggctcagggagaaagtgcatacagcccctggccctctctgcccttccgtcccc 73
|||||||||||||| ||||||||| || | |||||||||||||||||||||||||||||
Sbjct: 14 caggaggggctcagagagaaagtgtgtataacccctggccctctctgcccttccgtcccc 73
Query: 74 tg 75
||
Sbjct: 74 tg 75
>RF00772;mir-328;ABRQ01013064.1/2495-2578 9813:Procavia capensis
(cape rock hyrax)
Length = 84
Score = 77.8 bits (39), Expect = 2e-14
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 14 caggaggggctcagggagaaagtgcatacagcccctggccctctctgcccttccgtccc 72
|||||||||||||||||| ||||| || ||| ||||||||||||||||||||||||||
Sbjct: 14 caggaggggctcagggaggaagtgtgtatagcacctggccctctctgcccttccgtccc 72
>RF00772;mir-328;AANN01235694.1/888-971 9365:Erinaceus europaeus
(western European hedgehog)
Length = 84
Score = 75.8 bits (38), Expect = 7e-14
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 14 caggaggggctcagggagaaagtgcatacagcccctggccctctctgcccttccgtcccc 73
|||||||||||||||||||||||| || |||||||||||||||||||||||| ||||
Sbjct: 14 caggaggggctcagggagaaagtgtatgtcacccctggccctctctgcccttccgccccc 73
Query: 74 tg 75
||
Sbjct: 74 tg 75
>RF00772;mir-328;AAKN02026507.1/7919-8002 10141:Cavia porcellus
(domestic guinea pig)
Length = 84
Score = 75.8 bits (38), Expect = 7e-14
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 14 caggaggggctcagggagaaagtgcatacagcccctggccctctctgcccttccgtcccc 73
|||||| ||||||||||||||| | || |||||||||||||||||||||||| ||||||
Sbjct: 14 caggagtggctcagggagaaagcgtgtaaagcccctggccctctctgcccttctgtcccc 73
Query: 74 tg 75
||
Sbjct: 74 tg 75
>RF00772;mir-328;AAYZ01109814.1/701-618 9978:Ochotona princeps
(American pika)
Length = 84
Score = 61.9 bits (31), Expect = 1e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 14 caggaggggctcagggagaaagtgcatacagcccctggccctctctgcccttccgtccc 72
|||||||||||||||||| | ||| || ||||||||||||||||||||||||||||
Sbjct: 14 caggaggggctcagggaggagagacatgcaacccctggccctctctgcccttccgtccc 72
>RF00772;mir-328;AAGU02937408.1/1191-1107 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 43 agcccctggccctctctgcccttccgtccc 72
|||||||||||||||||||| |||||||||
Sbjct: 44 agcccctggccctctctgccattccgtccc 73
>RF00772;mir-328;AAIY01730415.1/379-299 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 46 ccctggccctctctgcccttccgtcccc 73
||||||||||||||||||||||| ||||
Sbjct: 43 ccctggccctctctgcccttccgccccc 70
