miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30947_ppy-mir-329-2:mirbase
Length = 83
Score = 157 bits (79), Expect = 1e-39
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 1 gtggtacctgaagagaggttttctgggtttctgtttctttattgaggacgaaacacacct 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 gtggtacctgaagagaggttttctgggtttctgtttctttattgaggatgaaacacacct 60
Query: 61 ggttaacctcttttccagtatca 83
|||||||||||||||||||||||
Sbjct: 61 ggttaacctcttttccagtatca 83
>28578_hsa-mir-329-1:mirbase
Length = 80
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 3 ggtacctgaagagaggttttctgggtttctgtttctttattgaggacgaaacacacctgg 62
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 ggtacctgaagagaggttttctgggtttctgtttctttaatgaggacgaaacacacctgg 60
Query: 63 ttaacctcttttccagtatc 82
||||||||||||||||||||
Sbjct: 61 ttaacctcttttccagtatc 80
>30328_ptr-mir-329-1:mirbase
Length = 79
Score = 149 bits (75), Expect = 4e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 4 gtacctgaagagaggttttctgggtttctgtttctttattgaggacgaaacacacctggt 63
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 gtacctgaagagaggttttctgggtttctgtttctttaatgaggacgaaacacacctggt 60
Query: 64 taacctcttttccagtatc 82
|||||||||||||||||||
Sbjct: 61 taacctcttttccagtatc 79
>30329_ptr-mir-329-2:mirbase
Length = 79
Score = 149 bits (75), Expect = 4e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 4 gtacctgaagagaggttttctgggtttctgtttctttattgaggacgaaacacacctggt 63
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gtacctgaagagaggttttctgggtttctgtttctttattgaggatgaaacacacctggt 60
Query: 64 taacctcttttccagtatc 82
|||||||||||||||||||
Sbjct: 61 taacctcttttccagtatc 79
>33322_bta-mir-329b:mirbase
Length = 83
Score = 149 bits (75), Expect = 4e-37
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 2 tggtacctgaagagaggttttctgggtttctgtttctttattgaggacgaaacacacctg 61
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 1 tggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctg 60
Query: 62 gttaacctcttttccagtatcaa 84
|||||||||||||||||||||||
Sbjct: 61 gttaacctcttttccagtatcaa 83
>33811_oar-mir-329b:mirbase
Length = 124
Score = 149 bits (75), Expect = 4e-37
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 2 tggtacctgaagagaggttttctgggtttctgtttctttattgaggacgaaacacacctg 61
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 29 tggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctg 88
Query: 62 gttaacctcttttccagtatcaa 84
|||||||||||||||||||||||
Sbjct: 89 gttaacctcttttccagtatcaa 111
>33812_oar-mir-329b:mirbase
Length = 124
Score = 149 bits (75), Expect = 4e-37
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 2 tggtacctgaagagaggttttctgggtttctgtttctttattgaggacgaaacacacctg 61
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 29 tggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctg 88
Query: 62 gttaacctcttttccagtatcaa 84
|||||||||||||||||||||||
Sbjct: 89 gttaacctcttttccagtatcaa 111
>26801_cfa-mir-329b:mirbase
Length = 80
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 3 ggtacctgaagagaggttttctgggtttctgtttctttattgaggacgaaacacacctgg 62
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 1 ggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctgg 60
Query: 63 ttaacctcttttccagtatc 82
||||||||||||||||||||
Sbjct: 61 ttaacctcttttccagtatc 80
>27841_mml-mir-329-1:mirbase
Length = 84
Score = 143 bits (72), Expect = 2e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 1 gtggtacctgaagagaggttttctgggtttctgtttctttattgaggacgaaacacacct 60
||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 1 gtggtacctgaagggaggttttctgggtttctgtttctttaatgaggatgaaacacacct 60
Query: 61 ggttaacctcttttccagtatcaa 84
||||||||||||||||||||||||
Sbjct: 61 ggttaacctcttttccagtatcaa 84
>30946_ppy-mir-329-1:mirbase
Length = 80
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 3 ggtacctgaagagaggttttctgggtttctgtttctttattgaggacgaaacacacctgg 62
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 1 ggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctgg 60
Query: 63 ttaacctcttttccagtatc 82
||||||||||||||||||||
Sbjct: 61 ttaacctcttttccagtatc 80
>27125_eca-mir-329:mirbase
Length = 98
Score = 133 bits (67), Expect = 2e-32
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 1 gtggtacctgaagagaggttttctgggtttctgtttctttattgaggacgaaacacacct 60
||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||
Sbjct: 11 gtggtacctgaagagaggttttctgggtttctgtttctttaatgaagatgaaacacacct 70
Query: 61 ggttaacctcttttccagtatca 83
||||||||||||||||||||||
Sbjct: 71 agttaacctcttttccagtatca 93
>27842_mml-mir-329-2:mirbase
Length = 80
Score = 127 bits (64), Expect = 1e-30
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 3 ggtacctgaagagaggttttctgggtttctgtttctttattgaggacgaaacacacctgg 62
||||||||||| |||||||||||||| |||||||||||| |||||| |||||||||||||
Sbjct: 1 ggtacctgaagggaggttttctgggtctctgtttctttactgaggatgaaacacacctgg 60
Query: 63 ttaacctcttttccagtatc 82
||||||||||||||||||||
Sbjct: 61 ttaacctcttttccagtatc 80
>33321_bta-mir-329a:mirbase
Length = 83
Score = 101 bits (51), Expect = 8e-23
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 1 gtggtacctgaagagaggttttctgggtttctgtttctttattgaggacgaaacacacct 60
||||||| ||| |||||||||||| ||| ||||||||||| |||||| |||||||||||
Sbjct: 1 gtggtacttgaggagaggttttctaggtctctgtttctttcatgaggatgaaacacacct 60
Query: 61 ggttaacctcttttccagtatca 83
||||||||| |||||||||||||
Sbjct: 61 ggttaaccttttttccagtatca 83
>33809_oar-mir-329a:mirbase
Length = 104
Score = 93.7 bits (47), Expect = 2e-20
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 1 gtggtacctgaagagaggttttctgggtttctgtttctttattgaggacgaaacacacct 60
||||||| ||| |||||||||||| ||| || |||||||| |||||| |||||||||||
Sbjct: 9 gtggtacttgaggagaggttttctaggtctccgtttctttcatgaggatgaaacacacct 68
Query: 61 ggttaacctcttttccagtatca 83
||||||||| |||||||||||||
Sbjct: 69 ggttaaccttttttccagtatca 91
>33810_oar-mir-329a:mirbase
Length = 104
Score = 93.7 bits (47), Expect = 2e-20
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 1 gtggtacctgaagagaggttttctgggtttctgtttctttattgaggacgaaacacacct 60
||||||| ||| |||||||||||| ||| || |||||||| |||||| |||||||||||
Sbjct: 9 gtggtacttgaggagaggttttctaggtctccgtttctttcatgaggatgaaacacacct 68
Query: 61 ggttaacctcttttccagtatca 83
||||||||| |||||||||||||
Sbjct: 69 ggttaaccttttttccagtatca 91
>26800_cfa-mir-329a:mirbase
Length = 60
Score = 79.8 bits (40), Expect = 3e-16
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 14 agaggttttctgggtttctgtttctttattgaggacgaaacacacctggttaacctcttt 73
||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||
Sbjct: 1 agaggttttctgggtttctgtttctttcatgaggatgaaacacacccagttaacctcttt 60
>31996_mmu-mir-329:mirbase
Length = 97
Score = 77.8 bits (39), Expect = 1e-15
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 2 tggtacctgaagagaggttttctgggtttctgtttctttattgaggacgaaacacacctg 61
||||||| ||||||||||||||||||| ||||||||||| |||| | ||||||||||
Sbjct: 11 tggtaccggaagagaggttttctgggtctctgtttctttgatgagaatgaaacacaccca 70
Query: 62 gttaacctcttttccagtatcaa 84
| |||||| |||| |||||||||
Sbjct: 71 gctaacctttttttcagtatcaa 93
>32850_rno-mir-329:mirbase
Length = 97
Score = 77.8 bits (39), Expect = 1e-15
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 2 tggtacctgaagagaggttttctgggtttctgtttctttattgaggacgaaacacacctg 61
||||||| ||||||||||||||||||| ||||||||||| |||| | ||||||||||
Sbjct: 11 tggtaccggaagagaggttttctgggtctctgtttctttgatgagaatgaaacacaccca 70
Query: 62 gttaacctcttttccagtatcaa 84
| |||||| |||| |||||||||
Sbjct: 71 gctaacctttttttcagtatcaa 93
