miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27848_mml-mir-337:mirbase
Length = 93
Score = 184 bits (93), Expect = 7e-48
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgatgcacagttatccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgatgcacagttatccag 60
Query: 61 ctcctatatgatgcctttcttcatccccttcaa 93
|||||||||||||||||||||||||||||||||
Sbjct: 61 ctcctatatgatgcctttcttcatccccttcaa 93
>27849_mml-mir-337:mirbase
Length = 93
Score = 184 bits (93), Expect = 7e-48
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgatgcacagttatccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgatgcacagttatccag 60
Query: 61 ctcctatatgatgcctttcttcatccccttcaa 93
|||||||||||||||||||||||||||||||||
Sbjct: 61 ctcctatatgatgcctttcttcatccccttcaa 93
>28586_hsa-mir-337:mirbase
Length = 93
Score = 184 bits (93), Expect = 7e-48
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgatgcacagttatccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgatgcacagttatccag 60
Query: 61 ctcctatatgatgcctttcttcatccccttcaa 93
|||||||||||||||||||||||||||||||||
Sbjct: 61 ctcctatatgatgcctttcttcatccccttcaa 93
>30953_ppy-mir-337:mirbase
Length = 93
Score = 184 bits (93), Expect = 7e-48
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgatgcacagttatccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgatgcacagttatccag 60
Query: 61 ctcctatatgatgcctttcttcatccccttcaa 93
|||||||||||||||||||||||||||||||||
Sbjct: 61 ctcctatatgatgcctttcttcatccccttcaa 93
>30954_ppy-mir-337:mirbase
Length = 93
Score = 184 bits (93), Expect = 7e-48
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgatgcacagttatccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgatgcacagttatccag 60
Query: 61 ctcctatatgatgcctttcttcatccccttcaa 93
|||||||||||||||||||||||||||||||||
Sbjct: 61 ctcctatatgatgcctttcttcatccccttcaa 93
>30333_ptr-mir-337:mirbase
Length = 92
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 2 tagtcagtagttggggggtgggaacggcttcatacaggagttgatgcacagttatccagc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tagtcagtagttggggggtgggaacggcttcatacaggagttgatgcacagttatccagc 60
Query: 62 tcctatatgatgcctttcttcatccccttcaa 93
||||||||||||||||||||||||||||||||
Sbjct: 61 tcctatatgatgcctttcttcatccccttcaa 92
>32855_rno-mir-337:mirbase
Length = 97
Score = 107 bits (54), Expect = 1e-24
Identities = 85/94 (90%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgat-gcacagttatcca 59
||||| || |||||||||||||||||||| |||| ||||||||||| |||||| || ||
Sbjct: 4 gtagtgagaagttggggggtgggaacggcgtcatgcaggagttgattgcacagccattca 63
Query: 60 gctcctatatgatgcctttcttcatccccttcaa 93
|||||||||||||||||||||||| |||||||||
Sbjct: 64 gctcctatatgatgcctttcttcacccccttcaa 97
>32002_mmu-mir-337:mirbase
Length = 97
Score = 105 bits (53), Expect = 5e-24
Identities = 84/93 (90%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgat-gcacagttatcca 59
||||| || |||||||||||||||||||| |||| ||||||||||| |||||| || ||
Sbjct: 5 gtagtgagaagttggggggtgggaacggcgtcatgcaggagttgattgcacagccattca 64
Query: 60 gctcctatatgatgcctttcttcatccccttca 92
|||||||||||||||||||||||| ||||||||
Sbjct: 65 gctcctatatgatgcctttcttcacccccttca 97
>32003_mmu-mir-337:mirbase
Length = 97
Score = 105 bits (53), Expect = 5e-24
Identities = 84/93 (90%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgat-gcacagttatcca 59
||||| || |||||||||||||||||||| |||| ||||||||||| |||||| || ||
Sbjct: 5 gtagtgagaagttggggggtgggaacggcgtcatgcaggagttgattgcacagccattca 64
Query: 60 gctcctatatgatgcctttcttcatccccttca 92
|||||||||||||||||||||||| ||||||||
Sbjct: 65 gctcctatatgatgcctttcttcacccccttca 97
>33030_rno-mir-3544:mirbase
Length = 88
Score = 105 bits (53), Expect = 5e-24
Identities = 78/85 (91%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 10 agttggggggtgggaacggcttcatacaggagttgat-gcacagttatccagctcctata 68
|||||||||||||||||||| |||| ||||||||||| |||||| || |||||||||||
Sbjct: 88 agttggggggtgggaacggcgtcatgcaggagttgattgcacagccattcagctcctata 29
Query: 69 tgatgcctttcttcatccccttcaa 93
||||||||||||||| |||||||||
Sbjct: 28 tgatgcctttcttcacccccttcaa 4
>27129_eca-mir-337:mirbase
Length = 92
Score = 103 bits (52), Expect = 2e-23
Identities = 83/92 (90%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgatgcacagttatccag 60
||||||||||| ||||||||| ||||||||||||||||||| |||||| |||||| ||||
Sbjct: 1 gtagtcagtaggtggggggtgagaacggcttcatacaggagctgatgcgcagttacccag 60
Query: 61 ctcctatatgatgcctttcttcatccccttca 92
||||||| |||||||||| ||| ||||||||
Sbjct: 61 ctcctatgagatgcctttcctca-ccccttca 91
>27130_eca-mir-337:mirbase
Length = 92
Score = 103 bits (52), Expect = 2e-23
Identities = 83/92 (90%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgatgcacagttatccag 60
||||||||||| ||||||||| ||||||||||||||||||| |||||| |||||| ||||
Sbjct: 1 gtagtcagtaggtggggggtgagaacggcttcatacaggagctgatgcgcagttacccag 60
Query: 61 ctcctatatgatgcctttcttcatccccttca 92
||||||| |||||||||| ||| ||||||||
Sbjct: 61 ctcctatgagatgcctttcctca-ccccttca 91
