miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00765;mir-337;AAGU02593771.1/135-230 9785:Loxodonta africana
(African savanna elephant)
Length = 96
Score = 167 bits (84), Expect = 3e-41
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 2 tagtcagtagttggggggtgggaacggcttcatacaggagttgatgcacagttatccagc 61
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tagtcagtaggtggggggtgagaacggcttcatacaggagttgatgcacagttatccagc 64
Query: 62 tcctatatgatgcctttcttcatccccttcaa 93
||||||||||||||||||||||||||||||||
Sbjct: 65 tcctatatgatgcctttcttcatccccttcaa 96
>RF00765;mir-337;AAGV021061352.1/555-650 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 96
Score = 147 bits (74), Expect = 3e-35
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 6 cagtagttggggggtgggaacggcttcatacaggagttgatgcacagttatccagctcct 65
|||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 9 cagtaggtggggggtgggaacggcttcatacaggagttggtggacagttatccagctcct 68
Query: 66 atatgatgcctttcttcatccccttc 91
||||||||||||||||||||||||||
Sbjct: 69 atatgatgcctttcttcatccccttc 94
>RF00765;mir-337;AAGW01106121.1/1459-1555 9986:Oryctolagus
cuniculus (rabbit)
Length = 97
Score = 133 bits (67), Expect = 4e-31
Identities = 83/87 (95%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 8 gtagttggggggtgggaacggcttcatacaggagttgat-gcacagttatccagctccta 66
||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 11 gtagttgggggatgggaacggcttcatacaggagttgattgcacagtcatccagctccta 70
Query: 67 tatgatgcctttcttcatccccttcaa 93
|||||||||||||||||||| ||||||
Sbjct: 71 tatgatgcctttcttcatcctcttcaa 97
>RF00765;mir-337;AC152063.5/103745-103649 10090:Mus musculus
(house mouse)
Length = 97
Score = 107 bits (54), Expect = 2e-23
Identities = 85/94 (90%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgat-gcacagttatcca 59
||||| || |||||||||||||||||||| |||| ||||||||||| |||||| || ||
Sbjct: 4 gtagtgagaagttggggggtgggaacggcgtcatgcaggagttgattgcacagccattca 63
Query: 60 gctcctatatgatgcctttcttcatccccttcaa 93
|||||||||||||||||||||||| |||||||||
Sbjct: 64 gctcctatatgatgcctttcttcacccccttcaa 97
>RF00765;mir-337;AAPY01359946.1/778-872 37347:Tupaia belangeri
(northern tree shrew)
Length = 95
Score = 97.6 bits (49), Expect = 2e-20
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 11 gttggggggtgggaacggcttcatacaggagttgatgcacagttatccagctcctatatg 70
|||||||||| ||||||||||||||||||||||| ||| |||||| || |||||||||||
Sbjct: 13 gttggggggtaggaacggcttcatacaggagttggtgcgcagttacccggctcctatatg 72
Query: 71 atgcctttcttca 83
| |||||||||||
Sbjct: 73 acgcctttcttca 85
>RF00765;mir-337;ABRP01372708.1/596-690 132908:Pteropus vampyrus
(large flying fox)
Length = 95
Score = 85.7 bits (43), Expect = 9e-17
Identities = 71/79 (89%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 14 ggggggtgggaacggcttcatacaggagttgatgcacagttatccagctcctatatgatg 73
|||||||| ||||||| |||| ||||||||||||| |||||| ||||| |||| ||||||
Sbjct: 17 ggggggtgagaacggcctcatccaggagttgatgc-cagttacccagcgcctagatgatg 75
Query: 74 cctttcttcatccccttca 92
|||||||||| ||||||||
Sbjct: 76 cctttcttcacccccttca 94
>RF00765;mir-337;AAYZ01391475.1/920-994 9978:Ochotona princeps
(American pika)
Length = 75
Score = 56.0 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 50 cagttatccagctcctatatgatgcctttcttcatc 85
|||| |||||||||||| ||||||||||||||||||
Sbjct: 32 cagtcatccagctcctagatgatgcctttcttcatc 67
