miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28588_hsa-mir-338:mirbase
Length = 67
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 1 tctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttg 60
Query: 61 ttgaaga 67
|||||||
Sbjct: 61 ttgaaga 67
>29228_hsa-mir-3065:mirbase
Length = 79
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 1 tctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 tctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttg 14
Query: 61 ttgaaga 67
|||||||
Sbjct: 13 ttgaaga 7
>29229_hsa-mir-3065:mirbase
Length = 79
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 1 tctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 tctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttg 14
Query: 61 ttgaaga 67
|||||||
Sbjct: 13 ttgaaga 7
>30334_ptr-mir-338:mirbase
Length = 66
Score = 131 bits (66), Expect = 6e-32
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1 tctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttg 60
Query: 61 ttgaag 66
||||||
Sbjct: 61 ttgaag 66
>27850_mml-mir-338:mirbase
Length = 67
Score = 125 bits (63), Expect = 4e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 1 tctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttg 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 tctccaacaatatcctggtgctgagtgatgactcaggtgactccagcatcagtgattttg 60
Query: 61 ttgaaga 67
|||||||
Sbjct: 61 ttgaaga 67
>27851_mml-mir-338:mirbase
Length = 67
Score = 125 bits (63), Expect = 4e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 1 tctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttg 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 tctccaacaatatcctggtgctgagtgatgactcaggtgactccagcatcagtgattttg 60
Query: 61 ttgaaga 67
|||||||
Sbjct: 61 ttgaaga 67
>30955_ppy-mir-338:mirbase
Length = 67
Score = 125 bits (63), Expect = 4e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 1 tctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttg 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 tctccaacaatatcctggtgctgagtgatgactcaggcaactccagcatcagtgattttg 60
Query: 61 ttgaaga 67
|||||||
Sbjct: 61 ttgaaga 67
>30956_ppy-mir-338:mirbase
Length = 67
Score = 125 bits (63), Expect = 4e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 1 tctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttg 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 tctccaacaatatcctggtgctgagtgatgactcaggcaactccagcatcagtgattttg 60
Query: 61 ttgaaga 67
|||||||
Sbjct: 61 ttgaaga 67
>33326_bta-mir-338:mirbase
Length = 92
Score = 103 bits (52), Expect = 1e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 17 ccaacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 76
Query: 64 aaga 67
||||
Sbjct: 77 aaga 80
>34061_ssc-mir-338:mirbase
Length = 79
Score = 103 bits (52), Expect = 1e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 10 ccaacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 69
Query: 64 aaga 67
||||
Sbjct: 70 aaga 73
>26805_cfa-mir-338:mirbase
Length = 59
Score = 93.7 bits (47), Expect = 1e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 6 aacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttga 64
||||||||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct: 1 aacaatatcctggtgctgagtgatgacacatgcaactccagcatcagtgattttgttga 59
>27131_eca-mir-338:mirbase
Length = 59
Score = 93.7 bits (47), Expect = 1e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 5 caacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
|||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
>27132_eca-mir-338:mirbase
Length = 59
Score = 93.7 bits (47), Expect = 1e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 5 caacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
|||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
>32004_mmu-mir-338:mirbase
Length = 98
Score = 63.9 bits (32), Expect = 1e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 24 ccaacaatatcctggtgctgagtgggtgcacagt-gactccagcatcagtgattttgttg 82
Query: 64 aaga 67
||||
Sbjct: 83 aaga 86
>32005_mmu-mir-338:mirbase
Length = 98
Score = 63.9 bits (32), Expect = 1e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 24 ccaacaatatcctggtgctgagtgggtgcacagt-gactccagcatcagtgattttgttg 82
Query: 64 aaga 67
||||
Sbjct: 83 aaga 86
>32498_mmu-mir-3065:mirbase
Length = 87
Score = 63.9 bits (32), Expect = 1e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 73 ccaacaatatcctggtgctgagtgggtgcacagt-gactccagcatcagtgattttgttg 15
Query: 64 aaga 67
||||
Sbjct: 14 aaga 11
>32856_rno-mir-338:mirbase
Length = 66
Score = 63.9 bits (32), Expect = 1e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 4 ccaacaatatcctggtgctgagtgggtgcacagt-gactccagcatcagtgattttgttg 62
Query: 64 aaga 67
||||
Sbjct: 63 aaga 66
>33022_rno-mir-3065:mirbase
Length = 103
Score = 63.9 bits (32), Expect = 1e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 80 ccaacaatatcctggtgctgagtgggtgcacagt-gactccagcatcagtgattttgttg 22
Query: 64 aaga 67
||||
Sbjct: 21 aaga 18
>33023_rno-mir-3065:mirbase
Length = 103
Score = 63.9 bits (32), Expect = 1e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 80 ccaacaatatcctggtgctgagtgggtgcacagt-gactccagcatcagtgattttgttg 22
Query: 64 aaga 67
||||
Sbjct: 21 aaga 18
>27442_mdo-mir-338:mirbase
Length = 89
Score = 60.0 bits (30), Expect = 2e-10
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 4 ccaacaatatcctggtgctgagtgat-gactca-ggcgactccagcatcagtgattttgt 61
|||||||||||||| |||||||||| | | || || |||||||||||||||||||||||
Sbjct: 12 ccaacaatatcctgatgctgagtgagcggcacatggagactccagcatcagtgattttgt 71
Query: 62 tgaaga 67
||||||
Sbjct: 72 tgaaga 77
>34389_dre-mir-338-1:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 actccagcatcagtgattttgttg 63
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>34390_dre-mir-338-2:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 actccagcatcagtgattttgttg 63
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>34391_dre-mir-338-3:mirbase
Length = 124
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 actccagcatcagtgattttgttg 63
||||||||||||||||||||||||
Sbjct: 69 actccagcatcagtgattttgttg 92
>34392_dre-mir-338-4:mirbase
Length = 124
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 actccagcatcagtgattttgttg 63
||||||||||||||||||||||||
Sbjct: 69 actccagcatcagtgattttgttg 92
>34649_fru-mir-338:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 actccagcatcagtgattttgttg 63
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>34797_tni-mir-338:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 actccagcatcagtgattttgttg 63
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>25847_xtr-mir-338-1:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 41 ctccagcatcagtgattttgttg 63
|||||||||||||||||||||||
Sbjct: 47 ctccagcatcagtgattttgttg 69
>25848_xtr-mir-338-2:mirbase
Length = 60
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 41 ctccagcatcagtgattttgttg 63
|||||||||||||||||||||||
Sbjct: 38 ctccagcatcagtgattttgttg 60
>26523_tgu-mir-338:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 41 ctccagcatcagtgattttgttg 63
|||||||||||||||||||||||
Sbjct: 40 ctccagcatcagtgattttgttg 62
>26524_tgu-mir-338:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 41 ctccagcatcagtgattttgttg 63
|||||||||||||||||||||||
Sbjct: 40 ctccagcatcagtgattttgttg 62
