miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00686;mir-338;ABRO01103244.1/1456-1377 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 80
Score = 103 bits (52), Expect = 3e-22
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
|||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||
Sbjct: 12 ccaacaatatcctggtgctgagtggtgactccggcaactccagcatcagtgattttgttg 71
Query: 64 aaga 67
||||
Sbjct: 72 aaga 75
>RF00686;mir-338;AANN01126736.1/1031-1108 9365:Erinaceus europaeus
(western European hedgehog)
Length = 78
Score = 63.9 bits (32), Expect = 2e-10
Identities = 55/60 (91%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
||||||| |||||||||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct: 12 ccaacaacatcctggtgctgagtgatga-tca-acaactccagcatcagtgattttgttg 69
>RF00686;mir-338;AL953913.5/23199-23121 10090:Mus musculus (house
mouse)
Length = 79
Score = 63.9 bits (32), Expect = 2e-10
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 12 ccaacaatatcctggtgctgagtgggtgcacagt-gactccagcatcagtgattttgttg 70
Query: 64 aaga 67
||||
Sbjct: 71 aaga 74
>RF00686;mir-338;ABRQ01133047.1/132-55 9813:Procavia capensis
(cape rock hyrax)
Length = 78
Score = 63.9 bits (32), Expect = 2e-10
Identities = 58/64 (90%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
|||||||||||||| ||||||||||||| | | | ||||||||||||||||||||||||
Sbjct: 12 ccaacaatatcctgc-gctgagtgatgacaccg-caactccagcatcagtgattttgttg 69
Query: 64 aaga 67
||||
Sbjct: 70 aaga 73
>RF00686;mir-338;AAWZ01002449.1/77719-77800 28377:Anolis
carolinensis (green anole)
Length = 82
Score = 61.9 bits (31), Expect = 9e-10
Identities = 60/66 (90%), Gaps = 4/66 (6%)
Strand = Plus / Plus
Query: 5 caacaatatcctggtgctgagtga-tg--actcaggcgactccagcatcagtgattttgt 61
|||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct: 13 caacaatatcctggtgctgagtgagtggcactcaaa-gactccagcatcagtgattttgt 71
Query: 62 tgaaga 67
||||||
Sbjct: 72 tgaaga 77
>RF00686;mir-338;AAFR03029132.1/115398-115317 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 82
Score = 60.0 bits (30), Expect = 3e-09
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 4 ccaacaatatcctggtgctgagtgat-gactca-ggcgactccagcatcagtgattttgt 61
|||||||||||||| |||||||||| | | || || |||||||||||||||||||||||
Sbjct: 12 ccaacaatatcctgatgctgagtgagcggcacatggagactccagcatcagtgattttgt 71
Query: 62 tgaaga 67
||||||
Sbjct: 72 tgaaga 77
>RF00686;mir-338;BX547935.12/10590-10671 7955:Danio rerio
(zebrafish)
Length = 82
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 gactccagcatcagtgattttgttg 63
|||||||||||||||||||||||||
Sbjct: 49 gactccagcatcagtgattttgttg 73
>RF00686;mir-338;CAAE01014705.1/537256-537337 99883:Tetraodon
nigroviridis
Length = 82
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 gactccagcatcagtgattttgttg 63
|||||||||||||||||||||||||
Sbjct: 49 gactccagcatcagtgattttgttg 73
>RF00686;mir-338;AANH01012267.1/23040-22957 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 84
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 gactccagcatcagtgattttgttg 63
|||||||||||||||||||||||||
Sbjct: 51 gactccagcatcagtgattttgttg 75
>RF00686;mir-338;BAAF04103498.1/7620-7539 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 gactccagcatcagtgattttgttg 63
|||||||||||||||||||||||||
Sbjct: 49 gactccagcatcagtgattttgttg 73
>RF00686;mir-338;BX323027.8/66170-66089 7955:Danio rerio
(zebrafish)
Length = 82
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 actccagcatcagtgattttgttg 63
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>RF00686;mir-338;CT033796.7/14466-14548 7955:Danio rerio
(zebrafish)
Length = 83
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 actccagcatcagtgattttgttg 63
||||||||||||||||||||||||
Sbjct: 51 actccagcatcagtgattttgttg 74
>RF00686;mir-338;CAAB01002765.1/7900-7981 31033:Takifugu rubripes
Length = 82
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 actccagcatcagtgattttgttg 63
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>RF00686;mir-338;AANH01004322.1/123577-123496 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 82
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 actccagcatcagtgattttgttg 63
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>RF00686;mir-338;BAAF04022903.1/15976-15895 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 actccagcatcagtgattttgttg 63
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>RF00686;mir-338;BAAF04036435.1/2170-2253 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 actccagcatcagtgattttgttg 63
||||||||||||||||||||||||
Sbjct: 52 actccagcatcagtgattttgttg 75
>RF00686;mir-338;ABQF01038321.1/45632-45552 59729:Taeniopygia
guttata
Length = 81
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 41 ctccagcatcagtgattttgttg 63
|||||||||||||||||||||||
Sbjct: 50 ctccagcatcagtgattttgttg 72
>RF00686;mir-338;AAVX01571211.1/489-569 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 41 ctccagcatcagtgattttgttg 63
|||||||||||||||||||||||
Sbjct: 50 ctccagcatcagtgattttgttg 72
>RF00686;mir-338;AAVX01041385.1/4416-4496 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 41 ctccagcatcagtgattttgttg 63
|||||||||||||||||||||||
Sbjct: 50 ctccagcatcagtgattttgttg 72
