miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28590_hsa-mir-339:mirbase
Length = 94
Score = 186 bits (94), Expect = 2e-48
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 cggggcggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggggcggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcg 60
Query: 61 acgacagagccggcgcctgccccagtgtctgcgc 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacagagccggcgcctgccccagtgtctgcgc 94
>27852_mml-mir-339:mirbase
Length = 94
Score = 178 bits (90), Expect = 5e-46
Identities = 93/94 (98%)
Strand = Plus / Plus
Query: 1 cggggcggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggggcggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcg 60
Query: 61 acgacagagccggcgcctgccccagtgtctgcgc 94
||||||||||||||||| ||||||||||||||||
Sbjct: 61 acgacagagccggcgcccgccccagtgtctgcgc 94
>27853_mml-mir-339:mirbase
Length = 94
Score = 178 bits (90), Expect = 5e-46
Identities = 93/94 (98%)
Strand = Plus / Plus
Query: 1 cggggcggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggggcggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcg 60
Query: 61 acgacagagccggcgcctgccccagtgtctgcgc 94
||||||||||||||||| ||||||||||||||||
Sbjct: 61 acgacagagccggcgcccgccccagtgtctgcgc 94
>30335_ptr-mir-339:mirbase
Length = 93
Score = 176 bits (89), Expect = 2e-45
Identities = 92/93 (98%)
Strand = Plus / Plus
Query: 1 cggggcggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggggcggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcg 60
Query: 61 acgacagagccggcgcctgccccagtgtctgcg 93
||||||||||| |||||||||||||||||||||
Sbjct: 61 acgacagagccagcgcctgccccagtgtctgcg 93
>30957_ppy-mir-339:mirbase
Length = 96
Score = 151 bits (76), Expect = 1e-37
Identities = 93/96 (96%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 1 cggggcggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcc-tc 59
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 cggggcggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgccttc 60
Query: 60 gacgaca-gagccggcgcctgccccagtgtctgcgc 94
||||||| ||||||||||| ||||||||||||||||
Sbjct: 61 gacgacaggagccggcgcccgccccagtgtctgcgc 96
>32006_mmu-mir-339:mirbase
Length = 96
Score = 105 bits (53), Expect = 6e-24
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 1 cggggcggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcg 60
||||| |||| || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2 cggggtggccactatccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctcg 61
Query: 61 acgacagagccgg 73
||||||||||||
Sbjct: 62 gcgacagagccgg 74
>32007_mmu-mir-339:mirbase
Length = 96
Score = 105 bits (53), Expect = 6e-24
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 1 cggggcggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcg 60
||||| |||| || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2 cggggtggccactatccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctcg 61
Query: 61 acgacagagccgg 73
||||||||||||
Sbjct: 62 gcgacagagccgg 74
>32857_rno-mir-339:mirbase
Length = 96
Score = 105 bits (53), Expect = 6e-24
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 15 tccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcgacgacagagcc 71
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 16 tccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctcgacgacagagcc 72
>32858_rno-mir-339:mirbase
Length = 96
Score = 105 bits (53), Expect = 6e-24
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 15 tccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcgacgacagagcc 71
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 16 tccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctcgacgacagagcc 72
>33327_bta-mir-339:mirbase
Length = 78
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 2 ggggcggccgctctccctgtcctccaggagctcac 36
||||| |||||| ||||||||||||||||||||||
Sbjct: 1 ggggcagccgctgtccctgtcctccaggagctcac 35
>34062_ssc-mir-339:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tccctgtcctccaggagctcac 36
||||||||||||||||||||||
Sbjct: 11 tccctgtcctccaggagctcac 32
>34063_ssc-mir-339:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tccctgtcctccaggagctcac 36
||||||||||||||||||||||
Sbjct: 11 tccctgtcctccaggagctcac 32
>33328_bta-mir-339b:mirbase
Length = 58
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 tccctgtcctccaggagctc 34
||||||||||||||||||||
Sbjct: 1 tccctgtcctccaggagctc 20
>34158_ssc-mir-4334:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 tccctgtcctccaggagctc 34
||||||||||||||||||||
Sbjct: 41 tccctgtcctccaggagctc 60
>34159_ssc-mir-4334:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 tccctgtcctccaggagctc 34
||||||||||||||||||||
Sbjct: 41 tccctgtcctccaggagctc 60
