miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30336_ptr-mir-340:mirbase
Length = 94
Score = 186 bits (94), Expect = 2e-48
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 ttgtacctggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgtacctggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 60
Query: 61 gtctcagttactttatagccatacctggtatctt 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 gtctcagttactttatagccatacctggtatctt 94
>27854_mml-mir-340:mirbase
Length = 95
Score = 180 bits (91), Expect = 1e-46
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 1 ttgtacctggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 ttgtacctggtgtgattataaagcaatgagactgattgtcatatgttgtttgtgggatcc 60
Query: 61 gtctcagttactttatagccatacctggtatctta 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 gtctcagttactttatagccatacctggtatctta 95
>30958_ppy-mir-340:mirbase
Length = 95
Score = 180 bits (91), Expect = 1e-46
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 1 ttgtacctggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgtatctggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 60
Query: 61 gtctcagttactttatagccatacctggtatctta 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 gtctcagttactttatagccatacctggtatctta 95
>32008_mmu-mir-340:mirbase
Length = 98
Score = 180 bits (91), Expect = 1e-46
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 1 ttgtacctggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ttgtacttggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 63
Query: 61 gtctcagttactttatagccatacctggtatctta 95
|||||||||||||||||||||||||||||||||||
Sbjct: 64 gtctcagttactttatagccatacctggtatctta 98
>32009_mmu-mir-340:mirbase
Length = 98
Score = 180 bits (91), Expect = 1e-46
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 1 ttgtacctggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ttgtacttggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 63
Query: 61 gtctcagttactttatagccatacctggtatctta 95
|||||||||||||||||||||||||||||||||||
Sbjct: 64 gtctcagttactttatagccatacctggtatctta 98
>33329_bta-mir-340:mirbase
Length = 95
Score = 180 bits (91), Expect = 1e-46
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 1 ttgtacctggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 ttgtacctggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatcc 60
Query: 61 gtctcagttactttatagccatacctggtatctta 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 gtctcagttactttatagccatacctggtatctta 95
>32859_rno-mir-340:mirbase
Length = 98
Score = 165 bits (83), Expect = 7e-42
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 9 ggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatccgtctcagt 68
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 12 ggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatccgtctcagt 71
Query: 69 tactttatagccatacctggtatctta 95
|||||||||||||||||||||||||||
Sbjct: 72 tactttatagccatacctggtatctta 98
>32860_rno-mir-340:mirbase
Length = 98
Score = 165 bits (83), Expect = 7e-42
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 9 ggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatccgtctcagt 68
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 12 ggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatccgtctcagt 71
Query: 69 tactttatagccatacctggtatctta 95
|||||||||||||||||||||||||||
Sbjct: 72 tactttatagccatacctggtatctta 98
>34064_ssc-mir-340:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 4 tacctggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatccgtc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tacctggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatccgtc 60
Query: 64 tcagttactttatagccata 83
||||||||||||||||||||
Sbjct: 61 tcagttactttatagccata 80
>26806_cfa-mir-340:mirbase
Length = 92
Score = 131 bits (66), Expect = 1e-31
Identities = 84/90 (93%)
Strand = Plus / Plus
Query: 1 ttgtacctggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 60
||||||||| || ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 1 ttgtacctgatgcgattataaagcaatgagactgattgtcatgtgtcggttgtgggatcc 60
Query: 61 gtctcagttactttatagccatacctggta 90
|||||||||||||||||||| | |||||||
Sbjct: 61 gtctcagttactttatagccgtgcctggta 90
>27133_eca-mir-340:mirbase
Length = 67
Score = 113 bits (57), Expect = 2e-26
Identities = 63/65 (96%)
Strand = Plus / Plus
Query: 16 ttataaagcaatgagactgattgtcatatgtcgtttgtgggatccgtctcagttacttta 75
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 3 ttataaagcaatgagactgattgtcatgtgtcgcttgtgggatccgtctcagttacttta 62
Query: 76 tagcc 80
|||||
Sbjct: 63 tagcc 67
>27134_eca-mir-340:mirbase
Length = 67
Score = 113 bits (57), Expect = 2e-26
Identities = 63/65 (96%)
Strand = Plus / Plus
Query: 16 ttataaagcaatgagactgattgtcatatgtcgtttgtgggatccgtctcagttacttta 75
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 3 ttataaagcaatgagactgattgtcatgtgtcgcttgtgggatccgtctcagttacttta 62
Query: 76 tagcc 80
|||||
Sbjct: 63 tagcc 67
