miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00760;mir-342;ABRO01161250.1/591-689 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 99
Score = 176 bits (89), Expect = 3e-44
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 6 tgggctcaaggtgaggggtgctatctgtgattgagggacatggttaatggaattgtctca 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tgggctcaaggtgaggggtgctatctgtgattgagggacatggttaatggaattgtctca 65
Query: 66 cacagaaatcgcacccgtcaccttggcct 94
|||||||||||||||||||||||||||||
Sbjct: 66 cacagaaatcgcacccgtcaccttggcct 94
>RF00760;mir-342;AANG01132780.1/2716-2814 9685:Felis catus
(domestic cat)
Length = 99
Score = 145 bits (73), Expect = 1e-34
Identities = 88/93 (94%)
Strand = Plus / Plus
Query: 1 gaaactgggctcaaggtgaggggtgctatctgtgattgagggacatggttaatggaattg 60
|||||||||| | ||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 1 gaaactgggcgcgaggtgaggggtgctatctgtgattgagggacatggcaaatagaattg 60
Query: 61 tctcacacagaaatcgcacccgtcaccttggcc 93
|||||||||||||||||||||||||||||||||
Sbjct: 61 tctcacacagaaatcgcacccgtcaccttggcc 93
>RF00760;mir-342;ABRQ01082244.1/3048-3146 9813:Procavia capensis
(cape rock hyrax)
Length = 99
Score = 143 bits (72), Expect = 5e-34
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 7 gggctcaaggtgaggggtgctatctgtgattgagggacatggttaatggaattgtctcac 66
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 7 gggctcaaggtgaggggtgctatctgtgattgagggacatggtacatagaattgtctcac 66
Query: 67 acagaaatcgcacccgtcaccttggcct 94
|||||||||||||||||| |||||||||
Sbjct: 67 acagaaatcgcacccgtctccttggcct 94
>RF00760;mir-342;AAKN02052316.1/108279-108377 10141:Cavia
porcellus (domestic guinea pig)
Length = 99
Score = 139 bits (70), Expect = 8e-33
Identities = 85/90 (94%)
Strand = Plus / Plus
Query: 5 ctgggctcaaggtgaggggtgctatctgtgattgagggacatggttaatggaattgtctc 64
|||||| ||||||||||||||||||||||| | |||||||||| | ||||||||||||||
Sbjct: 5 ctgggcccaaggtgaggggtgctatctgtgctggagggacatgatcaatggaattgtctc 64
Query: 65 acacagaaatcgcacccgtcaccttggcct 94
||||||||||||||||||||||||||||||
Sbjct: 65 acacagaaatcgcacccgtcaccttggcct 94
>RF00760;mir-342;AALT01532195.1/130-32 42254:Sorex araneus
(European shrew)
Length = 99
Score = 133 bits (67), Expect = 5e-31
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 5 ctgggctcaaggtgaggggtgctatctgtgattgagggacatggttaatggaattgtctc 64
|||||||||||||||||||||| |||||||| |||||||||||| || |||||||||||
Sbjct: 5 ctgggctcaaggtgaggggtgccatctgtgactgagggacatggccaaaggaattgtctc 64
Query: 65 acacagaaatcgcacccgtcaccttgg 91
|||||||||||||||||||||||||||
Sbjct: 65 acacagaaatcgcacccgtcaccttgg 91
>RF00760;mir-342;AAGW01329049.1/390-486 9986:Oryctolagus cuniculus
(rabbit)
Length = 97
Score = 89.7 bits (45), Expect = 6e-18
Identities = 70/77 (90%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 5 ctgggctcaaggtgaggggtgctatctgtgattgagggacatggttaatggaattgtctc 64
|||||||| |||||||||||||| |||||| |||||||||||| ||| ||||||||||
Sbjct: 5 ctgggctcgaggtgaggggtgctctctgtgcgtgagggacatgg-caatcgaattgtctc 63
Query: 65 acacagaaatcgcaccc 81
|||||||||||||||||
Sbjct: 64 acacagaaatcgcaccc 80
>RF00760;mir-342;AAFC03050755.1/31465-31562 9913:Bos taurus
(cattle)
Length = 98
Score = 63.9 bits (32), Expect = 4e-10
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 18 gaggggtgctatctgtgattgagggacatggttaatggaattgtctcacacagaaatcgc 77
||||||||||||||||| |||||| ||| || |||| || |||||||||||||||||||
Sbjct: 18 gaggggtgctatctgtggttgagg-acacggcaaatgaaactgtctcacacagaaatcgc 76
Query: 78 accc 81
||||
Sbjct: 77 accc 80
>RF00760;mir-342;AAYZ01348637.1/771-867 9978:Ochotona princeps
(American pika)
Length = 97
Score = 63.9 bits (32), Expect = 4e-10
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 18 gaggggtgctatctgtgattgagggacatggttaatggaattgtctcacacagaaatcgc 77
|||||||||| |||||| |||||||||||| ||||||| ||||||||||||| |||||
Sbjct: 18 gaggggtgctctctgtgcctgagggacatggc-aatggaactgtctcacacagacatcgc 76
Query: 78 accc 81
||||
Sbjct: 77 accc 80
