miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01044;mir-345;AC193024.5/98698-98794 9544:Macaca mulatta
(rhesus monkey)
Length = 97
Score = 151 bits (76), Expect = 2e-36
Identities = 85/88 (96%)
Strand = Plus / Plus
Query: 5 aaaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaacga 64
|||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 5 aaaccctaggtcggctgactcctagtcaagggctcgtggtggctggtgggccctgaacga 64
Query: 65 ggggtctggaggcctgggtttgaatatc 92
||||||||||||||||||||||||||||
Sbjct: 65 ggggtctggaggcctgggtttgaatatc 92
>RF01044;mir-345;AAYZ01540228.1/2113-2017 9978:Ochotona princeps
(American pika)
Length = 97
Score = 123 bits (62), Expect = 4e-28
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 4 caaaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaacg 63
||||||| |||||||||||||||| |||||| ||||| |||||||| ||||||||||||
Sbjct: 4 caaaccccaggtctgctgactcctcgtccagtgctcgagatggctgctgggccctgaact 63
Query: 64 aggggtctggaggcctgggtttgaatatcg 93
|||||||||||||||||||||||||||||
Sbjct: 64 gggggtctggaggcctgggtttgaatatcg 93
>RF01044;mir-345;AAPE01429219.1/603-698 59463:Myotis lucifugus
(little brown bat)
Length = 96
Score = 113 bits (57), Expect = 4e-25
Identities = 85/93 (91%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 acccaaaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctga 60
|||||||||| |||||||| |||||||||||||| ||| ||||||||||||||||||||
Sbjct: 1 acccaaaccc-aggtctgcggactcctagtccagtgcttgtgatggctggtgggccctgc 59
Query: 61 acgaggggtctggaggcctgggtttgaatatcg 93
| |||||||||||||||||||| |||||||||
Sbjct: 60 attaggggtctggaggcctgggtgtgaatatcg 92
>RF01044;mir-345;AAGU02348671.1/3072-3167 9785:Loxodonta africana
(African savanna elephant)
Length = 96
Score = 99.6 bits (50), Expect = 6e-21
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 12 aggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgaggggtct 71
||||||||||||||||||||||| ||| |||||||| |||||||||||| ||||| ||
Sbjct: 11 aggtctgctgactcctagtccagtgcttgtgatggccattgggccctgaactaggggcct 70
Query: 72 ggaggcctgggtttgaatatcg 93
|||||||||||||||| |||||
Sbjct: 71 ggaggcctgggtttgattatcg 92
>RF01044;mir-345;ABRO01389073.1/865-964 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 93.7 bits (47), Expect = 4e-19
Identities = 81/90 (90%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 1 acccaaaccctaggtctgctgactcctagtccagggctcgtg--atggctggtgggccct 58
|||||||||| ||| ||||||||||||||||||| ||||||| |||||||| |||||||
Sbjct: 1 acccaaaccc-agggctgctgactcctagtccagtgctcgtgctatggctggggggccct 59
Query: 59 gaacgaggggtctggaggcctgggtttgaa 88
|| | |||||||||||||||||| ||||||
Sbjct: 60 gagctaggggtctggaggcctggctttgaa 89
>RF01044;mir-345;AAKN02051921.1/6097-6192 10141:Cavia porcellus
(domestic guinea pig)
Length = 96
Score = 87.7 bits (44), Expect = 2e-17
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 6 aaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgag 65
||||| ||| ||||||||||| ||||||| ||||||||| | | ||||||||||| ||
Sbjct: 5 aaccccagggctgctgactcccagtccagtgctcgtgatcccagccgggccctgaactag 64
Query: 66 gggtctggaggcctgggtttgaat 89
||||||||||||||||||||||||
Sbjct: 65 gggtctggaggcctgggtttgaat 88
>RF01044;mir-345;AAIY01055903.1/172-268 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 97
Score = 81.8 bits (41), Expect = 2e-15
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 16 ctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgaggggtctggag 75
||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct: 15 ctgctgactcctagtccagtgctcgtgatgggcatagggccctgaactaggggtctggag 74
Query: 76 gcctgggtttgaatatcgaca 96
| ||| | |||||||||||||
Sbjct: 75 gtctgcgcttgaatatcgaca 95
>RF01044;mir-345;AC152061.6/175970-176065 10090:Mus musculus
(house mouse)
Length = 96
Score = 79.8 bits (40), Expect = 6e-15
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 16 ctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgaggggtctggag 75
|||||||| |||||||||| ||| ||| ||||| |||||||||||| ||||||||||||
Sbjct: 15 ctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggtctggag 74
Query: 76 gcctgggtttga 87
|||||||||||
Sbjct: 75 acctgggtttga 86
>RF01044;mir-345;AALT01091699.1/386-481 42254:Sorex araneus
(European shrew)
Length = 96
Score = 77.8 bits (39), Expect = 2e-14
Identities = 76/87 (87%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 1 acccaaaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctga 60
|||||||||| ||| | |||||||| |||||||| |||||||| ||||| ||||||||||
Sbjct: 1 acccaaaccc-aggccggctgactcttagtccagtgctcgtgaaggctgctgggccctga 59
Query: 61 acgaggggtctggaggcctgggtttga 87
|| ||||||||||||||||| ||||
Sbjct: 60 actgagggtctggaggcctgggcttga 86
>RF01044;mir-345;ABRQ01086688.1/67-160 9813:Procavia capensis
(cape rock hyrax)
Length = 94
Score = 69.9 bits (35), Expect = 6e-12
Identities = 70/79 (88%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 12 aggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgaggggtct 71
||||| ||||||||||||||||| |||||||||||| |||| ||||||| ||||||||
Sbjct: 11 aggtcagctgactcctagtccagtgctcgtgatggccattggg-cctgaactaggggtct 69
Query: 72 ggaggcctgggtttgaata 90
||||| || ||||||||||
Sbjct: 70 ggagg-ctaggtttgaata 87
