miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01903;mir-500;AAGW01126437.1/6267-6356 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 105 bits (53), Expect = 6e-23
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 5 aatccttggaacctaggtgtgagtgctatttcagtgcaacacacctattcaaggattcaa 64
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 19 aatccttggcacctaggtgtgagtgctgtttcagtgcaacacacctattcaaggattcaa 78
Query: 65 a 65
|
Sbjct: 79 a 79
>RF01903;mir-500;ABRQ01341134.1/4896-4985 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 91.7 bits (46), Expect = 9e-19
Identities = 55/58 (94%)
Strand = Plus / Plus
Query: 5 aatccttggaacctaggtgtgagtgctatttcagtgcaacacacctattcaaggattc 62
|||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 19 aatccttggaacctaggtgtgagtgctacttcagtgcaacacacctgttgaaggattc 76
>RF01903;mir-500;AANN01738471.1/11-100 9365:Erinaceus europaeus
(western European hedgehog)
Length = 90
Score = 81.8 bits (41), Expect = 9e-16
Identities = 51/53 (96%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 11 tggaacctaggtgtgagtgctatttcagtgcaacaca-cctattcaaggattc 62
|||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 24 tggaacctaggtgtgagtgctattccagtgcaacacaccctattcaaggattc 76
>RF01903;mir-500;ABRR01444762.1/1337-1426 30538:Lama pacos
(alpaca)
Length = 90
Score = 75.8 bits (38), Expect = 6e-14
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 4 gaatccttggaacctaggtgtgagtgctatttcagtgcaacacacctattcaaggattca 63
||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 18 gaatccttggaacctaggtgtgagtgccgttctgatgcaacacacctattcaaggattca 77
Query: 64 aa 65
||
Sbjct: 78 aa 79
