miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00659;mir-365;AAIY01424277.1/585-676 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 92
Score = 167 bits (84), Expect = 4e-41
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 14 acagcaagaaaaatgagggactttcaggggcagctgtgttttctgactcagtcataatgc 73
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 acagcaagaaaaatgagggactttcaggggcagctgtgttttgtgactcagtcataatgc 60
Query: 74 ccctaaaaatccttattgttcttgcagt 101
||||||||||||||||||||||||||||
Sbjct: 61 ccctaaaaatccttattgttcttgcagt 88
>RF00659;mir-365;AAPE01619298.1/1229-1137 59463:Myotis lucifugus
(little brown bat)
Length = 93
Score = 147 bits (74), Expect = 4e-35
Identities = 87/90 (96%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 14 acagcaagaaaaatgagggactttcaggggcagctgtgttttctgactc-agtcataatg 72
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 acagcaagaaaaataagggactttcaggggcagctgtgttttctgactcaagtcataatg 60
Query: 73 cccctaaaaatccttattgttcttgcagtg 102
||||||||||||||||||| ||||||||||
Sbjct: 61 cccctaaaaatccttattgctcttgcagtg 90
>RF00659;mir-365;AANG01161851.1/1480-1570 9685:Felis catus
(domestic cat)
Length = 91
Score = 143 bits (72), Expect = 5e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 14 acagcaagaaaaatgagggactttcaggggcagctgtgttttctgactcagtcataatgc 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acagcaagaaaaatgagggactttcaggggcagctgtgttttctgactcagtcataatgc 60
Query: 74 ccctaaaaatcc 85
||||||||||||
Sbjct: 61 ccctaaaaatcc 72
>RF00659;mir-365;BAAE01286148.1/272-364 8090:Oryzias latipes
(Japanese medaka)
Length = 93
Score = 115 bits (58), Expect = 1e-25
Identities = 80/86 (93%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 15 cagcaagaaaaatgagggactttcaggggcagctgtgtttt-ctgactcagtcataatgc 73
||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||||
Sbjct: 2 cagcaagaaaaatgagggacttttaggggcagctgtgttttattaacccagtcataatgc 61
Query: 74 ccctaaaaatccttattgttcttgca 99
|||||||||||||||||| |||||||
Sbjct: 62 ccctaaaaatccttattgctcttgca 87
>RF00659;mir-365;AADN02023913.1/98870-98778 9031:Gallus gallus
(chicken)
Length = 93
Score = 71.9 bits (36), Expect = 2e-12
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 23 aaaatgagggactttcaggggcagctgtgttttc-tgactcagtcataatgcccctaaaa 81
||||||||||||||| ||||||| ||||||| | | || | |||||||||||||||||
Sbjct: 10 aaaatgagggacttttgggggcagatgtgtttccattacactatcataatgcccctaaaa 69
Query: 82 atccttattgttcttgcagt 101
|||||||||| |||||||||
Sbjct: 70 atccttattgctcttgcagt 89
>RF00659;mir-365;CU138533.13/80864-80956 7955:Danio rerio
(zebrafish)
Length = 93
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 65 tcataatgcccctaaaaatccttattgttcttgca 99
||||||||||||||||||||||||||| |||||||
Sbjct: 53 tcataatgcccctaaaaatccttattgctcttgca 87
>RF00659;mir-365;AAVX01470594.1/166-258 7868:Callorhinchus milii
(ghost shark)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 63 agtcataatgcccctaaaaatccttatt 90
||||||||||||||||||||||| ||||
Sbjct: 51 agtcataatgcccctaaaaatccctatt 78
