miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00840;mir-374;AAGW01240856.1/838-768 9986:Oryctolagus cuniculus
          (rabbit)
          Length = 71

 Score =  125 bits (63), Expect = 8e-29
 Identities = 69/71 (97%)
 Strand = Plus / Plus

                                                                      
Query: 2  acatcggccattataatacaacctgataagtgttatagcacttatcagattgtattgtaa 61
          ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 1  acatcggccattataatacaacctgataagtgttacagcacttaccagattgtattgtaa 60

                     
Query: 62 ttgtctgtgta 72
          |||||||||||
Sbjct: 61 ttgtctgtgta 71




>RF00840;mir-374;AJ421479.1/16189-16259 10090:Mus musculus (house
          mouse)
          Length = 71

 Score = 60.0 bits (30), Expect = 4e-09
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                
Query: 13 tataatacaacctgataagtgttatagcacttatcagattgtattgtaattgtc 66
          |||||||||||||| |||||||| ||||||||| ||| ||||||| | ||||||
Sbjct: 12 tataatacaacctgctaagtgttctagcacttagcaggttgtattatcattgtc 65




>RF00840;mir-374;ABRP01307201.1/2979-2909 132908:Pteropus vampyrus
          (large flying fox)
          Length = 71

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                      
Query: 2  acatcggccattataatacaacctgataagtgttatagcacttatcagattgtattgtaa 61
          |||| |||| |||| ||||| |||||||||||||| |||||||| ||| |||||  ||||
Sbjct: 1  acataggccgttatgatacagcctgataagtgttacagcacttaccaggttgtaccgtaa 60

                     
Query: 62 ttgtctgtgta 72
           |||| |||||
Sbjct: 61 ctgtccgtgta 71




>RF00840;mir-374;AAGU02466059.1/2740-2670 9785:Loxodonta africana
          (African savanna elephant)
          Length = 71

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                     
Query: 13 tataatacaacctgataagtgttatagcacttatcagattgtattgtaattgtctgtgt 71
          |||||||||||||| |||||||  |||||||||||||  |||||| | |||||| ||||
Sbjct: 12 tataatacaacctgctaagtgtcctagcacttatcaggctgtattatcattgtccgtgt 70




>RF00840;mir-374;AAGV020234407.1/12295-12225 9361:Dasypus
          novemcinctus (nine-banded armadillo)
          Length = 71

 Score = 42.1 bits (21), Expect = 9e-04
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                               
Query: 13 tataatacaacctgataagtgttatagcacttatcagattgtattgtaattgt 65
          |||||||||||||| |||||||  |||||   | ||||||||||||| |||||
Sbjct: 12 tataatacaacctgttaagtgtcctagcatgaaccagattgtattgtcattgt 64




>RF00840;mir-374;AALT01656114.1/3449-3379 42254:Sorex araneus
          (European shrew)
          Length = 71

 Score = 42.1 bits (21), Expect = 9e-04
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                       
Query: 13 tataatacaacctgataagtgttatagcacttatcagattgtatt 57
          |||||||||||||| |||||||  || |||||| ||| |||||||
Sbjct: 12 tataatacaacctgctaagtgtactaccacttaccaggttgtatt 56