miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00840;mir-374;AJ421479.1/16189-16259 10090:Mus musculus (house
          mouse)
          Length = 71

 Score =  117 bits (59), Expect = 2e-26
 Identities = 65/67 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  actcggatggatataatacaacctgctaagtgtcctagcacttagcaggttgtattatca 60
          |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1  actcgggtggatataatacaacctgctaagtgttctagcacttagcaggttgtattatca 60

                 
Query: 61 ttgtccg 67
          |||||||
Sbjct: 61 ttgtccg 67



 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                        
Query: 13 ataatacaacctgctaagtgtcctagcacttagcaggttgtattat 58
          ||||||||||||||||||||    | ||||||||||||||||||||
Sbjct: 58 ataatacaacctgctaagtgctagaacacttagcaggttgtattat 13




>RF00840;mir-374;AAGU02466059.1/2740-2670 9785:Loxodonta africana
          (African savanna elephant)
          Length = 71

 Score =  115 bits (58), Expect = 7e-26
 Identities = 67/70 (95%)
 Strand = Plus / Plus

                                                                      
Query: 2  ctcggatggatataatacaacctgctaagtgtcctagcacttagcaggttgtattatcat 61
          |||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 2  ctcggatgaatataatacaacctgctaagtgtcctagcacttatcaggctgtattatcat 61

                    
Query: 62 tgtccgtgtc 71
          ||||||||||
Sbjct: 62 tgtccgtgtc 71




>RF00840;mir-374;AALT01656114.1/3449-3379 42254:Sorex araneus
          (European shrew)
          Length = 71

 Score = 97.6 bits (49), Expect = 2e-20
 Identities = 64/69 (92%)
 Strand = Plus / Plus

                                                                      
Query: 2  ctcggatggatataatacaacctgctaagtgtcctagcacttagcaggttgtattatcat 61
          |||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||| ||
Sbjct: 2  ctcggatggatataatacaacctgctaagtgtactaccacttaccaggttgtattattat 61

                   
Query: 62 tgtccgtgt 70
           ||||||||
Sbjct: 62 cgtccgtgt 70




>RF00840;mir-374;AAPE01385052.1/350-280 59463:Myotis lucifugus
          (little brown bat)
          Length = 71

 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                      
Query: 1  actcggatggatataatacaacctgctaagtgtcctagcacttagcaggttgtattatca 60
          |||| |||| ||||||||||||||| |||||| || |||||||| ||||||||| |||||
Sbjct: 1  actcagatgtatataatacaacctggtaagtggcccagcacttaccaggttgtactatca 60

              
Query: 61 ttgt 64
          ||||
Sbjct: 61 ttgt 64




>RF00840;mir-374;AAGV020234407.1/12295-12225 9361:Dasypus
          novemcinctus (nine-banded armadillo)
          Length = 71

 Score = 69.9 bits (35), Expect = 4e-12
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                      
Query: 1  actcggatggatataatacaacctgctaagtgtcctagcacttagcaggttgtattatca 60
          |||| |||||||||||||||||||| ||||||||||||||   | ||| ||||||| |||
Sbjct: 1  actcagatggatataatacaacctgttaagtgtcctagcatgaaccagattgtattgtca 60

                     
Query: 61 ttgtccgtgtc 71
          |||| ||||||
Sbjct: 61 ttgttcgtgtc 71




>RF00840;mir-374;AAGW01240856.1/838-768 9986:Oryctolagus cuniculus
          (rabbit)
          Length = 71

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                     
Query: 12 tataatacaacctgctaagtgtcctagcacttagcaggttgtattatcattgtccgtgt 70
          |||||||||||||| |||||||   |||||||| ||| ||||||| | |||||| ||||
Sbjct: 12 tataatacaacctgataagtgttacagcacttaccagattgtattgtaattgtctgtgt 70