miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00840;mir-374;AJ421479.1/16189-16259 10090:Mus musculus (house
mouse)
Length = 71
Score = 117 bits (59), Expect = 2e-26
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 1 actcggatggatataatacaacctgctaagtgtcctagcacttagcaggttgtattatca 60
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 actcgggtggatataatacaacctgctaagtgttctagcacttagcaggttgtattatca 60
Query: 61 ttgtccg 67
|||||||
Sbjct: 61 ttgtccg 67
Score = 52.0 bits (26), Expect = 9e-07
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 13 ataatacaacctgctaagtgtcctagcacttagcaggttgtattat 58
|||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 58 ataatacaacctgctaagtgctagaacacttagcaggttgtattat 13
>RF00840;mir-374;AAGU02466059.1/2740-2670 9785:Loxodonta africana
(African savanna elephant)
Length = 71
Score = 115 bits (58), Expect = 7e-26
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 2 ctcggatggatataatacaacctgctaagtgtcctagcacttagcaggttgtattatcat 61
|||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 2 ctcggatgaatataatacaacctgctaagtgtcctagcacttatcaggctgtattatcat 61
Query: 62 tgtccgtgtc 71
||||||||||
Sbjct: 62 tgtccgtgtc 71
>RF00840;mir-374;AALT01656114.1/3449-3379 42254:Sorex araneus
(European shrew)
Length = 71
Score = 97.6 bits (49), Expect = 2e-20
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 2 ctcggatggatataatacaacctgctaagtgtcctagcacttagcaggttgtattatcat 61
|||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||| ||
Sbjct: 2 ctcggatggatataatacaacctgctaagtgtactaccacttaccaggttgtattattat 61
Query: 62 tgtccgtgt 70
||||||||
Sbjct: 62 cgtccgtgt 70
>RF00840;mir-374;AAPE01385052.1/350-280 59463:Myotis lucifugus
(little brown bat)
Length = 71
Score = 71.9 bits (36), Expect = 1e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 1 actcggatggatataatacaacctgctaagtgtcctagcacttagcaggttgtattatca 60
|||| |||| ||||||||||||||| |||||| || |||||||| ||||||||| |||||
Sbjct: 1 actcagatgtatataatacaacctggtaagtggcccagcacttaccaggttgtactatca 60
Query: 61 ttgt 64
||||
Sbjct: 61 ttgt 64
>RF00840;mir-374;AAGV020234407.1/12295-12225 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 71
Score = 69.9 bits (35), Expect = 4e-12
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 1 actcggatggatataatacaacctgctaagtgtcctagcacttagcaggttgtattatca 60
|||| |||||||||||||||||||| |||||||||||||| | ||| ||||||| |||
Sbjct: 1 actcagatggatataatacaacctgttaagtgtcctagcatgaaccagattgtattgtca 60
Query: 61 ttgtccgtgtc 71
|||| ||||||
Sbjct: 61 ttgttcgtgtc 71
>RF00840;mir-374;AAGW01240856.1/838-768 9986:Oryctolagus cuniculus
(rabbit)
Length = 71
Score = 46.1 bits (23), Expect = 6e-05
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 12 tataatacaacctgctaagtgtcctagcacttagcaggttgtattatcattgtccgtgt 70
|||||||||||||| ||||||| |||||||| ||| ||||||| | |||||| ||||
Sbjct: 12 tataatacaacctgataagtgttacagcacttaccagattgtattgtaattgtctgtgt 70
