miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00840;mir-374;AJ421479.1/16189-16259 10090:Mus musculus (house
mouse)
Length = 71
Score = 117 bits (59), Expect = 2e-26
Identities = 65/67 (97%)
Strand = Plus / Minus
Query: 4 cggacaatgataatacaacctgctaagtgctaggacacttagcaggttgtattatatcca 63
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 67 cggacaatgataatacaacctgctaagtgctagaacacttagcaggttgtattatatcca 8
Query: 64 tccgagt 70
||||||
Sbjct: 7 cccgagt 1
Score = 52.0 bits (26), Expect = 9e-07
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 13 ataatacaacctgctaagtgctaggacacttagcaggttgtattat 58
|||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 13 ataatacaacctgctaagtgttctagcacttagcaggttgtattat 58
>RF00840;mir-374;AAGU02466059.1/2740-2670 9785:Loxodonta africana
(African savanna elephant)
Length = 71
Score = 113 bits (57), Expect = 3e-25
Identities = 66/69 (95%)
Strand = Plus / Minus
Query: 1 acacggacaatgataatacaacctgctaagtgctaggacacttagcaggttgtattatat 60
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 70 acacggacaatgataatacagcctgataagtgctaggacacttagcaggttgtattatat 11
Query: 61 ccatccgag 69
||||||||
Sbjct: 10 tcatccgag 2
>RF00840;mir-374;AALT01656114.1/3449-3379 42254:Sorex araneus
(European shrew)
Length = 71
Score = 97.6 bits (49), Expect = 2e-20
Identities = 64/69 (92%)
Strand = Plus / Minus
Query: 1 acacggacaatgataatacaacctgctaagtgctaggacacttagcaggttgtattatat 60
|||||||| || ||||||||||||| |||||| ||| |||||||||||||||||||||||
Sbjct: 70 acacggacgataataatacaacctggtaagtggtagtacacttagcaggttgtattatat 11
Query: 61 ccatccgag 69
|||||||||
Sbjct: 10 ccatccgag 2
>RF00840;mir-374;AAPE01385052.1/350-280 59463:Myotis lucifugus
(little brown bat)
Length = 71
Score = 71.9 bits (36), Expect = 1e-12
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 7 acaatgataatacaacctgctaagtgctaggacacttagcaggttgtattatatccatcc 66
||||||||| ||||||||| |||||||| || |||||| ||||||||||||||| ||||
Sbjct: 64 acaatgatagtacaacctggtaagtgctgggccacttaccaggttgtattatatacatct 5
Query: 67 gagt 70
||||
Sbjct: 4 gagt 1
>RF00840;mir-374;AAGV020234407.1/12295-12225 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 71
Score = 67.9 bits (34), Expect = 2e-11
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 1 acacggacaatgataatacaacctgctaagtgctaggacacttagcaggttgtattatat 60
||||| ||||||| ||||||| ||| | |||||||||||||| |||||||||||||||
Sbjct: 70 acacgaacaatgacaatacaatctggttcatgctaggacacttaacaggttgtattatat 11
Query: 61 ccatccgagt 70
||||| ||||
Sbjct: 10 ccatctgagt 1
>RF00840;mir-374;AAGW01240856.1/838-768 9986:Oryctolagus cuniculus
(rabbit)
Length = 71
Score = 46.1 bits (23), Expect = 6e-05
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 1 acacggacaatgataatacaacctgctaagtgctaggacacttagcaggttgtattata 59
|||| |||||| | ||||||| ||| |||||||| ||||||| ||||||||||||||
Sbjct: 70 acacagacaattacaatacaatctggtaagtgctgtaacacttatcaggttgtattata 12
