miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00711;mir-449;ABBA01015737.1/36023-35937 9606:Homo sapiens
(human)
Length = 87
Score = 165 bits (83), Expect = 1e-40
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 3 tgggatgtgtcaggtaggcagtgtattgctagcggctgttaatgattttaacagttgcta 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 tgggatgtgtcaggtaggcagtgtattgctagcggctgttaatgattttaacagtagcta 60
Query: 63 gttgcactcctctctgttgcattcaga 89
|||||||||||||||||||||||||||
Sbjct: 61 gttgcactcctctctgttgcattcaga 87
>RF00711;mir-449;CABD01761585.1/586-500 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 87
Score = 157 bits (79), Expect = 3e-38
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 3 tgggatgtgtcaggtaggcagtgtattgctagcggctgttaatgattttaacagttgcta 62
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 tgggatgtgtcaggtaggcagtgtattgctagcggctgttaataattttaacagttgcta 60
Query: 63 gttgcactcctctctgttgcattcaga 89
|||||| ||||||||||||||||||||
Sbjct: 61 gttgcattcctctctgttgcattcaga 87
>RF00711;mir-449;AAWR02016364.1/4252-4337 9796:Equus caballus
(horse)
Length = 86
Score = 79.8 bits (40), Expect = 6e-15
Identities = 74/83 (89%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 5 ggatgtgtcaggtaggcagtgtattgctagc-ggctgttaatgattttaacagttgctag 63
||||||||||||||||||||| ||||||||| |||| || | ||||||||||||||| |
Sbjct: 3 ggatgtgtcaggtaggcagtgcattgctagctggctatt--tcattttaacagttgctgg 60
Query: 64 ttgcactcctctctgttgcattc 86
|||| |||| |||||||||||||
Sbjct: 61 ttgcgctcccctctgttgcattc 83
>RF00711;mir-449;AAQQ01588713.1/2879-2788 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 92
Score = 75.8 bits (38), Expect = 9e-14
Identities = 76/87 (87%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 5 ggatgtgtcaggtaggcagtgtattgctagc-ggctgttaa----tgattttaacagttg 59
||||||||||||||||||||| ||||||||| |||||||| | || ||||||||||
Sbjct: 3 ggatgtgtcaggtaggcagtgcattgctagctggctgttagaatttcatcttaacagttg 62
Query: 60 ctagttgcactcctctctgttgcattc 86
||||||||||||| ||||| |||||||
Sbjct: 63 ctagttgcactcccctctgctgcattc 89
>RF00711;mir-449;AAKN02031494.1/12165-12258 10141:Cavia porcellus
(domestic guinea pig)
Length = 94
Score = 73.8 bits (37), Expect = 3e-13
Identities = 79/92 (85%), Gaps = 7/92 (7%)
Strand = Plus / Plus
Query: 5 ggatgtgtcaggtaggcagtgtattgctagc-ggctgttaa------tgattttaacagt 57
||||||| ||| ||||||||| ||||||||| ||||||||| | |||||| ||||
Sbjct: 3 ggatgtgacagataggcagtgcattgctagctggctgttaagatttttcattttagcagt 62
Query: 58 tgctagttgcactcctctctgttgcattcaga 89
|||||||||||||||||||||||||| |||||
Sbjct: 63 tgctagttgcactcctctctgttgcaatcaga 94
>RF00711;mir-449;ABRP01028864.1/1010-924 132908:Pteropus vampyrus
(large flying fox)
Length = 87
Score = 71.9 bits (36), Expect = 1e-12
Identities = 74/84 (88%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 5 ggatgtgtcaggtaggcagtgtattgctagc-ggctgttaatgattttaacagttgctag 63
|||||||||||||||||||| ||||||||| ||||||| || |||| |||||| |||||
Sbjct: 3 ggatgtgtcaggtaggcagtacattgctagctggctgtt-ataatttcaacagtggctag 61
Query: 64 ttgcactcctctctgttgcattca 87
||| |||| ||||||||||||||
Sbjct: 62 ttgtgctcccctctgttgcattca 85
>RF00711;mir-449;AAPY01138081.1/497-406 37347:Tupaia belangeri
(northern tree shrew)
Length = 92
Score = 63.9 bits (32), Expect = 3e-10
Identities = 78/90 (86%), Gaps = 5/90 (5%)
Strand = Plus / Plus
Query: 5 ggatgtgtcaggtaggcagtgtattgctagc-ggctgtt--aatg--attttaacagttg 59
||||||||||||| ||||||| | ||||||| ||||||| ||| |||||||||||||
Sbjct: 3 ggatgtgtcaggttggcagtgcaatgctagctggctgttgtaattccattttaacagttg 62
Query: 60 ctagttgcactcctctctgttgcattcaga 89
|||||| |||| | ||||||||||||||||
Sbjct: 63 ctagttacactgccctctgttgcattcaga 92
>RF00711;mir-449;ABRN01386480.1/1100-1009 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 92
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 47 attttaacagttgctagttgcactcctctctgttg 81
|||||||||||||||||||||||||| ||||||||
Sbjct: 50 attttaacagttgctagttgcactcccctctgttg 84
>RF00711;mir-449;AANN01422130.1/1413-1504 9365:Erinaceus europaeus
(western European hedgehog)
Length = 92
Score = 56.0 bits (28), Expect = 8e-08
Identities = 72/85 (84%), Gaps = 5/85 (5%)
Strand = Plus / Plus
Query: 5 ggatgtgtcaggtaggcagtgtattgctagc-ggctgttaatg----attttaacagttg 59
|||||||||||| |||||||| ||| ||||| |||||||| | |||||||||| ||
Sbjct: 3 ggatgtgtcagggaggcagtgcattactagctggctgttatcgtgtcattttaacagctg 62
Query: 60 ctagttgcactcctctctgttgcat 84
||||||||||||| | |||||||||
Sbjct: 63 ctagttgcactcccccctgttgcat 87
>RF00711;mir-449;AAQR01454395.1/1341-1250 30611:Otolemur garnettii
(small-eared galago)
Length = 92
Score = 56.0 bits (28), Expect = 8e-08
Identities = 77/90 (85%), Gaps = 5/90 (5%)
Strand = Plus / Plus
Query: 5 ggatgtgtcaggtaggcagtgtattgctagc-ggctgtt--aatg--attttaacagttg 59
||||||||| ||||||||||| ||||||||| ||||||| ||| | |||||||||||
Sbjct: 3 ggatgtgtcgggtaggcagtgcattgctagctggctgttgtaatttcactttaacagttg 62
Query: 60 ctagttgcactcctctctgttgcattcaga 89
|| |||||||||| |||||| || ||||||
Sbjct: 63 ctggttgcactcccctctgtcgcgttcaga 92
>RF00711;mir-449;ABVD01243309.1/246-153 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 94
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 ggatgtgtcaggtaggcagtgtattgcta 33
||||||||||||||||||||| |||||||
Sbjct: 3 ggatgtgtcaggtaggcagtgcattgcta 31
