miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00722;mir-451;AAGU02141945.1/2025-1955 9785:Loxodonta africana
(African savanna elephant)
Length = 71
Score = 91.7 bits (46), Expect = 1e-18
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 8 agcaagagaaccattaccattactaaactcagtaatggtaacggtt 53
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 agcaagagaaccattaccattactaaactcagtaatggtaacggtt 17
>RF00722;mir-451;AAKN02033337.1/59671-59742 10141:Cavia porcellus
(domestic guinea pig)
Length = 72
Score = 89.7 bits (45), Expect = 4e-18
Identities = 57/61 (93%)
Strand = Plus / Minus
Query: 8 agcaagagaaccattaccattactaaactcagtaatggtaacggtttccttgccattccc 67
|||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 63 agcaagagaaccgtcaccattactaaactcagtaatggtaacggtttcctcgccatcccc 4
Query: 68 a 68
|
Sbjct: 3 a 3
>RF00722;mir-451;AAPN01323131.1/127-56 9258:Ornithorhynchus
anatinus (platypus)
Length = 72
Score = 85.7 bits (43), Expect = 6e-17
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 12 agagaaccattaccattactaaactcagtaatggtaacggtttccttgcca 62
|||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 59 agagaaccgttaccattactaaactcagtaatggtaacggtttcctcgcca 9
>RF00722;mir-451;ABQO010853698.1/772-701 9315:Macropus eugenii
(tammar wallaby)
Length = 72
Score = 83.8 bits (42), Expect = 2e-16
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 8 agcaagagaaccattaccattactaaactcagtaatggtaacggtttcct 57
|||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 63 agcaagagaaccgttaccattactaaacacagtaatggtaacggtttcct 14
>RF00722;mir-451;AADN02025858.1/509-580 9031:Gallus gallus
(chicken)
Length = 72
Score = 81.8 bits (41), Expect = 1e-15
Identities = 47/49 (95%)
Strand = Plus / Minus
Query: 14 agaaccattaccattactaaactcagtaatggtaacggtttccttgcca 62
|||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 57 agaaccgttaccattactaaactcagtaatggtaacggtttccctgcca 9
>RF00722;mir-451;ABQF01026376.1/875-804 59729:Taeniopygia guttata
Length = 72
Score = 77.8 bits (39), Expect = 2e-14
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 14 agaaccattaccattactaaactcagtaatggtaacggtttcc 56
|||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 57 agaaccgttaccattactaaactcagtaatggtaacggtttcc 15
>RF00722;mir-451;BX548073.8/159677-159748 7955:Danio rerio
(zebrafish)
Length = 72
Score = 75.8 bits (38), Expect = 6e-14
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 14 agaaccattaccattactaaactcagtaatggtaacggtttc 55
|||||| |||||||||||||||||||||||||||||||||||
Sbjct: 57 agaacccttaccattactaaactcagtaatggtaacggtttc 16
>RF00722;mir-451;AAFR03044825.1/5420-5349 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 72
Score = 71.9 bits (36), Expect = 9e-13
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 13 gagaaccattaccattactaaactcagtaatggtaacggtttcc 56
||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 58 gagaacccttaccattactaaacacagtaatggtaacggtttcc 15
>RF00722;mir-451;BAAF04033966.1/3754-3826 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 71.9 bits (36), Expect = 9e-13
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 15 gaaccattaccattactaaactcagtaatggtaacggttt 54
||||| ||||||||||||||||||||||||||||||||||
Sbjct: 56 gaacccttaccattactaaactcagtaatggtaacggttt 17
>RF00722;mir-451;CAAB01000931.1/60591-60519 31033:Takifugu
rubripes
Length = 73
Score = 50.1 bits (25), Expect = 3e-06
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Minus
Query: 15 gaaccattaccattact-aaactcagtaatggtaacggttt 54
||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 57 gaacccttaccataactgaaactcagtaatggtaacggttt 17
>RF00722;mir-451;AANH01000562.1/126354-126425 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 72
Score = 48.1 bits (24), Expect = 1e-05
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 16 aaccattaccattact-aaactcagtaatggtaacggttt 54
|||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 56 aacccttaccataactgaaactcagtaatggtaacggttt 17
