miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30385_ptr-mir-454:mirbase
Length = 114
Score = 226 bits (114), Expect = 3e-60
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 1 tctgtttatcaccagatcctagaaccctatcaatattgtctctgctgtgtaaatagttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctgtttatcaccagatcctagaaccctatcaatattgtctctgctgtgtaaatagttct 60
Query: 61 gagtagtgcaatattgcttatagggttttggtgtttggaaagaacaatgggcag 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gagtagtgcaatattgcttatagggttttggtgtttggaaagaacaatgggcag 114
>27916_mml-mir-454:mirbase
Length = 115
Score = 220 bits (111), Expect = 2e-58
Identities = 114/115 (99%)
Strand = Plus / Plus
Query: 1 tctgtttatcaccagatcctagaaccctatcaatattgtctctgctgtgtaaatagttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctgtttatcaccagatcctagaaccctatcaatattgtctctgctgtgtaaatagttct 60
Query: 61 gagtagtgcaatattgcttatagggttttggtgtttggaaagaacaatgggcagg 115
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 61 gagtagtgcaatattgcttatagggttttggtgtttgggaagaacaatgggcagg 115
>33386_bta-mir-454:mirbase
Length = 114
Score = 190 bits (96), Expect = 2e-49
Identities = 108/112 (96%)
Strand = Plus / Plus
Query: 2 ctgtttatcaccagatcctagaaccctatcaatattgtctctgctgtgtaaatagttctg 61
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 1 ctgtttattaccagatcctagaaccctatcgatattgtctctgctgtgtaaatagctctg 60
Query: 62 agtagtgcaatattgcttatagggttttggtgtttggaaagaacaatgggca 113
||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 61 agtagtgcaatattgcttatagggttttggtgtttgggaagaacaatgggca 112
>31557_oan-mir-454:mirbase
Length = 94
Score = 135 bits (68), Expect = 8e-33
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 11 accagatcctagaaccctatcaatattgtctctgctgtgtaaatagttctgagtagtgca 70
|||||||||| |||||||||| |||||||||||||||||||||||| | |||||||||||
Sbjct: 3 accagatcctggaaccctatcgatattgtctctgctgtgtaaatagctgtgagtagtgca 62
Query: 71 atattgcttatagggttttggtgtttgg 98
||||||||||||||||||| ||||||||
Sbjct: 63 atattgcttatagggttttagtgtttgg 90
>26852_cfa-mir-454:mirbase
Length = 70
Score = 123 bits (62), Expect = 3e-29
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 21 agaaccctatcaatattgtctctgctgtgtaaatagttctgagtagtgcaatattgctta 80
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 agaaccctatcgatattgtctctgctgtgtaaatagctctgagtagtgcaatattgctta 60
Query: 81 tagggttttg 90
||||||||||
Sbjct: 61 tagggttttg 70
>27187_eca-mir-454:mirbase
Length = 69
Score = 113 bits (57), Expect = 3e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 21 agaaccctatcaatattgtctctgctgtgtaaatagttctgagtagtgcaatattgctta 80
||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 1 agaaccctatcgatattgtctctgctgtgtaaatcgctctgagtagtgcaatattgctta 60
Query: 81 tagggtttt 89
|||||||||
Sbjct: 61 tagggtttt 69
>34474_dre-mir-454a:mirbase
Length = 124
Score = 52.0 bits (26), Expect = 9e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 56 gttctgagtagtgcaatattgcttatagggtttt 89
|||| |||||||||||||||||| ||||||||||
Sbjct: 69 gttcagagtagtgcaatattgctaatagggtttt 102
>34475_dre-mir-454b:mirbase
Length = 116
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 61 gagtagtgcaatattgcttatagggt 86
||||||||||||||||||||||||||
Sbjct: 63 gagtagtgcaatattgcttatagggt 88
>26031_gga-mir-454:mirbase
Length = 121
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 62 agtagtgcaatattgcttatagggt 86
|||||||||||||||||||||||||
Sbjct: 70 agtagtgcaatattgcttatagggt 94
>26533_tgu-mir-454:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 62 agtagtgcaatattgcttatagggt 86
|||||||||||||||||||||||||
Sbjct: 39 agtagtgcaatattgcttatagggt 63
