miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00746;mir-454;ABRQ01507750.1/1602-1488 9813:Procavia capensis
(cape rock hyrax)
Length = 115
Score = 194 bits (98), Expect = 2e-49
Identities = 110/114 (96%)
Strand = Plus / Plus
Query: 2 ctgtttatcaccagatcctagaaccctatcaatattgtctctgctgtgtaaatagttctg 61
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2 ctgtttattaccagatcctagaaccctatcgatattgtctctgctgtgtaaatagttctg 61
Query: 62 agtagtgcaatattgcttatagggttttggtgtttggaaagaacaatgggcagg 115
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 62 agtagtgcaatattgcttatagggttttagtgtttgggaagaacaatgggcagg 115
>RF00746;mir-454;ABRT010588575.1/1885-2001 9478:Tarsius syrichta
(Philippine tarsier)
Length = 117
Score = 123 bits (62), Expect = 5e-28
Identities = 100/110 (90%), Gaps = 2/110 (1%)
Strand = Plus / Plus
Query: 7 tatcaccagatcctagaaccctatcaata-ttgtctctgctgtgtaaatagttctgagta 65
|||||||||||||| | | ||||| ||| |||||||||||||| |||||||||||||||
Sbjct: 7 tatcaccagatccttgcattctatcgataattgtctctgctgtgaaaatagttctgagta 66
Query: 66 gtgcaatattgcttat-agggttttggtgtttggaaagaacaatgggcag 114
||||| |||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 67 gtgcagtattgcttataagggttttggtgtttgggaagaacaatgggcag 116
>RF00746;mir-454;AAFR03045417.1/66257-66371 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 115
Score = 105 bits (53), Expect = 1e-22
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 22 gaaccctatcaatattgtctctgctgtgtaaatagttctgagtagtgcaatattgcttat 81
||||||||||||| | |||||||||||||| |||| | | ||||||||||||||||||||
Sbjct: 22 gaaccctatcaatgtggtctctgctgtgtacatagctgtaagtagtgcaatattgcttat 81
Query: 82 agggttttggtgtttggaaagaaca 106
|||||||| || |||||||||||||
Sbjct: 82 agggttttagtttttggaaagaaca 106
>RF00746;mir-454;AAVX01021344.1/1948-2058 7868:Callorhinchus milii
(ghost shark)
Length = 111
Score = 73.8 bits (37), Expect = 4e-13
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 24 accctatcaatattgtctctgctgtgtaaatagttctgagtagtgcaatattgcttatag 83
|||||||| |||||| ||||||| |||| || | | ||||||||||||||||||||||||
Sbjct: 24 accctatcgatattgcctctgctttgtagatggctgtgagtagtgcaatattgcttatag 83
Query: 84 ggttt 88
|||||
Sbjct: 84 ggttt 88
>RF00746;mir-454;BX957246.7/151285-151170 7955:Danio rerio
(zebrafish)
Length = 116
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 61 gagtagtgcaatattgcttatagggt 86
||||||||||||||||||||||||||
Sbjct: 63 gagtagtgcaatattgcttatagggt 88
>RF00746;mir-454;AC091299.2/31120-31004 7955:Danio rerio
(zebrafish)
Length = 117
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 56 gttctgagtagtgcaatattgcttatagggtttt 89
|||| |||||||||||||||||| ||||||||||
Sbjct: 58 gttcagagtagtgcaatattgctaatagggtttt 91
>RF00746;mir-454;AANH01010010.1/101669-101555 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 61 gagtagtgcaatattgcttatagggt 86
||||||||||||||||||||||||||
Sbjct: 63 gagtagtgcaatattgcttatagggt 88
>RF00746;mir-454;BAAE01186103.1/68-179 8090:Oryzias latipes
(Japanese medaka)
Length = 112
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 57 ttctgagtagtgcaatattgcttatagggt 86
|||| |||||||||||||||||||||||||
Sbjct: 58 ttctcagtagtgcaatattgcttatagggt 87
>RF00746;mir-454;AAVX01227898.1/233-348 7868:Callorhinchus milii
(ghost shark)
Length = 116
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 62 agtagtgcaatattgcttatagggttttgg 91
||||||||||||| ||||||||||||||||
Sbjct: 63 agtagtgcaatatcgcttatagggttttgg 92
>RF00746;mir-454;AAWZ01024587.1/22473-22587 28377:Anolis
carolinensis (green anole)
Length = 115
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 62 agtagtgcaatattgcttatagggt 86
|||||||||||||||||||||||||
Sbjct: 62 agtagtgcaatattgcttatagggt 86
>RF00746;mir-454;AADN02034763.1/4411-4297 9031:Gallus gallus
(chicken)
Length = 115
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 62 agtagtgcaatattgcttatagggt 86
|||||||||||||||||||||||||
Sbjct: 58 agtagtgcaatattgcttatagggt 82
>RF00746;mir-454;CAAB01003137.1/22509-22626 31033:Takifugu
rubripes
Length = 118
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 62 agtagtgcaatattgcttatagggt 86
|||||||||||||||||||||||||
Sbjct: 64 agtagtgcaatattgcttatagggt 88
>RF00746;mir-454;AAIY01209324.1/410-527 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 118
Score = 46.1 bits (23), Expect = 1e-04
Identities = 42/47 (89%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 39 tctctgctgtgtaaatagttc-tgagtagtgcaatattgcttatagg 84
||||||||||||||||| || ||||||||||| |||||||| ||||
Sbjct: 37 tctctgctgtgtaaatatctcttgagtagtgcagtattgcttgtagg 83
