miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27917_mml-mir-455:mirbase
Length = 96
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 atgggcatatacacttgcctcaaggcctatgtcatc 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctcaaggcctatgtcatc 96
>27918_mml-mir-455:mirbase
Length = 96
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 atgggcatatacacttgcctcaaggcctatgtcatc 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctcaaggcctatgtcatc 96
>28666_hsa-mir-455:mirbase
Length = 96
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 atgggcatatacacttgcctcaaggcctatgtcatc 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctcaaggcctatgtcatc 96
>31017_ppy-mir-455:mirbase
Length = 96
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 atgggcatatacacttgcctcaaggcctatgtcatc 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctcaaggcctatgtcatc 96
>31018_ppy-mir-455:mirbase
Length = 96
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 atgggcatatacacttgcctcaaggcctatgtcatc 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctcaaggcctatgtcatc 96
>30386_ptr-mir-455:mirbase
Length = 95
Score = 188 bits (95), Expect = 5e-49
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 2 ccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcca 60
Query: 62 tgggcatatacacttgcctcaaggcctatgtcatc 96
|||||||||||||||||||||||||||||||||||
Sbjct: 61 tgggcatatacacttgcctcaaggcctatgtcatc 95
>33387_bta-mir-455:mirbase
Length = 89
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 atgggcatatacacttgcctcaaggccta 89
|||||||||||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctcaaggccta 89
>25863_xtr-mir-455:mirbase
Length = 87
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccctggcgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 atgggcatatacacttgcctcaagg 85
|||||||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctcaagg 85
>34476_dre-mir-455:mirbase
Length = 96
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccctggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 atgggcatatacacttgcctcaaggccta 89
|||||||||||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctcaaggccta 89
>34103_ssc-mir-455:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 5 tggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtccatgg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtccatgg 60
Query: 65 gcatatacacttgcctcaag 84
||||||||||||||||||||
Sbjct: 61 gcatatacacttgcctcaag 80
>26032_gga-mir-455:mirbase
Length = 86
Score = 153 bits (77), Expect = 3e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccctggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 atgggcatatacacttgcctcaagg 85
|||||||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctcaagg 85
>26033_gga-mir-455:mirbase
Length = 86
Score = 153 bits (77), Expect = 3e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccctggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 atgggcatatacacttgcctcaagg 85
|||||||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctcaagg 85
>27453_mdo-mir-455:mirbase
Length = 87
Score = 153 bits (77), Expect = 3e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 1 tccctggcgtgagggtatgtgcccttggactacatcgtggaagccaacaccatgcagtcc 60
Query: 61 atgggcatatacacttgcctcaagg 85
|||||||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctcaagg 85
>34653_fru-mir-455:mirbase
Length = 84
Score = 145 bits (73), Expect = 7e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 2 ccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcca 61
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccctggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcca 60
Query: 62 tgggcatatacacttgcctca 82
|||||||||||||||||||||
Sbjct: 61 tgggcatatacacttgcctca 81
>34801_tni-mir-455:mirbase
Length = 84
Score = 137 bits (69), Expect = 2e-33
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 9 gtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtccatgggcat 68
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcat 67
Query: 69 atacacttgcctcaagg 85
|||||||| ||||||||
Sbjct: 68 atacactttcctcaagg 84
>26534_tgu-mir-455:mirbase
Length = 71
Score = 133 bits (67), Expect = 3e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 13 gggtatgtgcctttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 72
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 60
Query: 73 acttgcctcaa 83
|||||||||||
Sbjct: 61 acttgcctcaa 71
>26853_cfa-mir-455:mirbase
Length = 58
Score = 115 bits (58), Expect = 6e-27
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 16 tatgtgcctttggactacatcgtggaagccagcaccatgcagtccatgggcatataca 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tatgtgcctttggactacatcgtggaagccagcaccatgcagtccatgggcatataca 58
>34477_dre-mir-455b:mirbase
Length = 105
Score = 113 bits (57), Expect = 2e-26
Identities = 75/81 (92%)
Strand = Plus / Plus
Query: 9 gtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtccatgggcat 68
||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 17 gtgagggtatgtgcccttggactacattgtggaggccagcaccatgcagtccatgggcat 76
Query: 69 atacacttgcctcaaggccta 89
|||||||| | ||| ||||||
Sbjct: 77 atacacttacttcatggccta 97
>32920_rno-mir-455:mirbase
Length = 78
Score = 111 bits (56), Expect = 9e-26
Identities = 72/76 (94%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 9 gtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtccatgggcat 68
||||| ||||||||||||||||||||||||||| || |||||||||||||||| ||||||
Sbjct: 4 gtgagcgtatgtgcctttggactacatcgtggacgc-agcaccatgcagtccacgggcat 62
Query: 69 atacacttgcctcaag 84
||||||||||||||||
Sbjct: 63 atacacttgcctcaag 78
>32088_mmu-mir-455:mirbase
Length = 82
Score = 107 bits (54), Expect = 1e-24
Identities = 76/82 (92%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
||||||| ||||| ||||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 2 tccctggtgtgagcgtatgtgcctttggactacatcgtgaacgc-agcaccatgcagtcc 60
Query: 61 atgggcatatacacttgcctca 82
| ||||||||||||||||||||
Sbjct: 61 acgggcatatacacttgcctca 82
