miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31019_ppy-mir-484:mirbase
Length = 79
Score = 157 bits (79), Expect = 1e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 agcctcgtcaggctcagtcccctcccgataaacccctaaatagggactttcccggggggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agcctcgtcaggctcagtcccctcccgataaacccctaaatagggactttcccggggggt 60
Query: 61 gaccctggcttttttggcg 79
|||||||||||||||||||
Sbjct: 61 gaccctggcttttttggcg 79
>30387_ptr-mir-484:mirbase
Length = 78
Score = 155 bits (78), Expect = 5e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 2 gcctcgtcaggctcagtcccctcccgataaacccctaaatagggactttcccggggggtg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcctcgtcaggctcagtcccctcccgataaacccctaaatagggactttcccggggggtg 60
Query: 62 accctggcttttttggcg 79
||||||||||||||||||
Sbjct: 61 accctggcttttttggcg 78
>27919_mml-mir-484:mirbase
Length = 63
Score = 125 bits (63), Expect = 5e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 7 gtcaggctcagtcccctcccgataaacccctaaatagggactttcccggggggtgaccct 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtcaggctcagtcccctcccgataaacccctaaatagggactttcccggggggtgaccct 60
Query: 67 ggc 69
|||
Sbjct: 61 ggc 63
>34104_ssc-mir-484:mirbase
Length = 83
Score = 115 bits (58), Expect = 5e-27
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 5 tcgtcaggctcagtcccctcccgataaacccctaaatagggactttcccggggggtgacc 64
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct: 8 tcgtcaggctcagtcccctcccgataaacccctaaatagggaccttcccagggggcgacc 67
Query: 65 ctggcttttttggc 78
| ||||||||||||
Sbjct: 68 caggcttttttggc 81
>33389_bta-mir-484:mirbase
Length = 63
Score = 89.7 bits (45), Expect = 3e-19
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 7 gtcaggctcagtcccctcccgataaacccctaaatagggactttcccgggggg 59
|||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 1 gtcaggctcagtcccctcccgataaacctctaaatagggaccttcccgggggg 53
>32173_mmu-mir-484:mirbase
Length = 67
Score = 67.9 bits (34), Expect = 1e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 4 ctcgtcaggctcagtcccctcccgataaacccctaaataggg 45
||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 1 ctcgtcaggctcagtcccctcccgataaacctcaaaataggg 42
>32929_rno-mir-484:mirbase
Length = 77
Score = 65.9 bits (33), Expect = 4e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 2 gcctcgtcaggctcagtcccctcccgataaacc 34
|||||||||||||||||||||||||||||||||
Sbjct: 40 gcctcgtcaggctcagtcccctcccgataaacc 72
