miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054376.1/2766-2844 9813:Procavia capensis
(cape rock hyrax)
Length = 79
Score = 137 bits (69), Expect = 2e-32
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 1 acttggagagaggctggccgtgatgaattcgattcatcaaagcgagtcatacacggctct 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 acttgaagagaggctggccgtgatgaattcgattcatcaaagcgagtcatacacggctct 63
Query: 61 cctctcttttagt 73
|||||||||||||
Sbjct: 64 cctctcttttagt 76
>RF00641;mir-154;EU616812.1/2503-2581 10090:Mus musculus (house
mouse)
Length = 79
Score = 121 bits (61), Expect = 1e-27
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 1 acttggagagaggctggccgtgatgaattcgattcatcaaagcgagtcatacacggctct 60
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 4 acttggagagaggctggccgtgatgaattcgattcatctaaacgagtcatacacggctct 63
Query: 61 cctctcttttagt 73
|||||||| ||||
Sbjct: 64 cctctcttctagt 76
>RF00641;mir-154;AADA01084967.1/16706-16786 9598:Pan troglodytes
(chimpanzee)
Length = 81
Score = 95.6 bits (48), Expect = 7e-20
Identities = 61/64 (95%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 1 acttggagagaggctggccgtgatgaattcgattcatcaaag-cgagtcatacacggctc 59
||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct: 4 acttggagagaggctggccgtgatgaattcgattcgtcaaagtcgagtcatactcggctc 63
Query: 60 tcct 63
||||
Sbjct: 64 tcct 67
>RF00641;mir-154;AANN01387448.1/1462-1384 9365:Erinaceus europaeus
(western European hedgehog)
Length = 79
Score = 91.7 bits (46), Expect = 1e-18
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 4 tggagagaggctggccgtgatgaattcgattcatcaaagcgagtcatacacggctctcct 63
|||||||||| |||||||||||||||||| | |||||||||||||||| ||||||||||
Sbjct: 7 tggagagaggacggccgtgatgaattcgatccctcaaagcgagtcatacgcggctctcct 66
Query: 64 ctcttt 69
||||||
Sbjct: 67 ctcttt 72
>RF00641;mir-154;AAGW01206555.1/4060-4141 9986:Oryctolagus
cuniculus (rabbit)
Length = 82
Score = 85.7 bits (43), Expect = 7e-17
Identities = 66/71 (92%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 5 ggagagaggctggc-cgtgatgaatt-cgattcatcaaagcgagtcatacacggctctcc 62
|||||||||||||| | || |||||| |||||||||||||||||||||||||||||||||
Sbjct: 9 ggagagaggctggctcatggtgaatttcgattcatcaaagcgagtcatacacggctctcc 68
Query: 63 tctcttttagt 73
|||||| ||||
Sbjct: 69 tctcttctagt 79
>RF00641;mir-154;AAKN02051949.1/123833-123911 10141:Cavia
porcellus (domestic guinea pig)
Length = 79
Score = 61.9 bits (31), Expect = 1e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 1 acttggagagaggctggccgtgatgaattcgattcatcaaagcgagtcatacacggctct 60
|||||||||| ||||||| ||||| | || ||| |||||||| || |||||||||||| |
Sbjct: 4 acttggagaggggctggctgtgatcagtttgatccatcaaagtgactcatacacggctgt 63
Query: 61 cctctct 67
|||||||
Sbjct: 64 cctctct 70
>RF00641;mir-154;AAQQ01350203.1/713-790 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 78
Score = 58.0 bits (29), Expect = 2e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 17 gccgtgatgaattcgattcatcaaagcgagtcatacacggctctcctctcttttagt 73
|||| |||||||||| |||||| ||| ||||| |||| | |||||||||||||||||
Sbjct: 19 gccgcgatgaattcggttcatccaagtgagtcctacatgactctcctctcttttagt 75
