miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27922_mml-mir-486:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 1 gcatcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 gcatcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagta 9
Query: 61 caggatac 68
||||||||
Sbjct: 8 caggatac 1
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 atcctgtactgagctgccccgag 25
|||||||||||||||||||||||
Sbjct: 3 atcctgtactgagctgccccgag 25
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 44 ctcggggcagctcagtacaggat 66
|||||||||||||||||||||||
Sbjct: 44 ctcggggcagctcagtacaggat 66
>27923_mml-mir-486:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 1 gcatcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 gcatcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagta 9
Query: 61 caggatac 68
||||||||
Sbjct: 8 caggatac 1
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 atcctgtactgagctgccccgag 25
|||||||||||||||||||||||
Sbjct: 3 atcctgtactgagctgccccgag 25
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 44 ctcggggcagctcagtacaggat 66
|||||||||||||||||||||||
Sbjct: 44 ctcggggcagctcagtacaggat 66
>28674_hsa-mir-486:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 gcatcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcatcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagta 60
Query: 61 caggatac 68
||||||||
Sbjct: 61 caggatac 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 44 ctcggggcagctcagtacaggat 66
|||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacaggat 3
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 3 atcctgtactgagctgccccgag 25
|||||||||||||||||||||||
Sbjct: 66 atcctgtactgagctgccccgag 44
>31022_ppy-mir-486:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 gcatcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcatcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagta 60
Query: 61 caggatac 68
||||||||
Sbjct: 61 caggatac 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 44 ctcggggcagctcagtacaggat 66
|||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacaggat 3
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 3 atcctgtactgagctgccccgag 25
|||||||||||||||||||||||
Sbjct: 66 atcctgtactgagctgccccgag 44
>30389_ptr-mir-486:mirbase
Length = 67
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 1 gcatcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcatcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagta 60
Query: 61 caggata 67
|||||||
Sbjct: 61 caggata 67
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 44 ctcggggcagctcagtacaggat 66
|||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacaggat 3
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 3 atcctgtactgagctgccccgag 25
|||||||||||||||||||||||
Sbjct: 66 atcctgtactgagctgccccgag 44
>27190_eca-mir-486:mirbase
Length = 66
Score = 103 bits (52), Expect = 1e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 3 atcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagtaca 62
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 3 atcctgtactgagctgccccgaggcccttcactgtgcccagctcggggcagctcagtaca 62
Query: 63 ggat 66
||||
Sbjct: 63 ggat 66
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 44 ctcggggcagctcagtacaggat 66
|||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacaggat 3
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 3 atcctgtactgagctgccccgag 25
|||||||||||||||||||||||
Sbjct: 66 atcctgtactgagctgccccgag 44
>27191_eca-mir-486:mirbase
Length = 66
Score = 103 bits (52), Expect = 1e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 3 atcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagtaca 62
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 3 atcctgtactgagctgccccgaggcccttcactgtgcccagctcggggcagctcagtaca 62
Query: 63 ggat 66
||||
Sbjct: 63 ggat 66
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 44 ctcggggcagctcagtacaggat 66
|||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacaggat 3
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 3 atcctgtactgagctgccccgag 25
|||||||||||||||||||||||
Sbjct: 66 atcctgtactgagctgccccgag 44
>32175_mmu-mir-486:mirbase
Length = 128
Score = 85.7 bits (43), Expect = 3e-18
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 4 tcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagtacag 63
||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||
Sbjct: 33 tcctgtactgagctgccccgaggtccttcactgtgctcagctcggggcagctcagtacag 92
Query: 64 gat 66
|||
Sbjct: 93 gat 95
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1 gcatcctgtactgagctgccccgag 25
|||||||||||||||||||||||||
Sbjct: 97 gcatcctgtactgagctgccccgag 73
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 44 ctcggggcagctcagtacagga 65
||||||||||||||||||||||
Sbjct: 54 ctcggggcagctcagtacagga 33
>32567_mmu-mir-3107:mirbase
Length = 90
Score = 85.7 bits (43), Expect = 3e-18
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 4 tcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagtacag 63
||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||
Sbjct: 76 tcctgtactgagctgccccgaggtccttcactgtgctcagctcggggcagctcagtacag 17
Query: 64 gat 66
|||
Sbjct: 16 gat 14
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcatcctgtactgagctgccccgag 25
|||||||||||||||||||||||||
Sbjct: 12 gcatcctgtactgagctgccccgag 36
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 ctcggggcagctcagtacagga 65
||||||||||||||||||||||
Sbjct: 55 ctcggggcagctcagtacagga 76
>33391_bta-mir-486:mirbase
Length = 124
Score = 75.8 bits (38), Expect = 3e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 4 tcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagtac 61
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 32 tcctgtactgagctgccccgaggcccttcgctgtgcccagctcgggtcagctcagtac 89
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 44 ctcggggcagctcagtacagga 65
||||||||||||||||||||||
Sbjct: 53 ctcggggcagctcagtacagga 32
>34106_ssc-mir-486-2:mirbase
Length = 82
Score = 67.9 bits (34), Expect = 8e-13
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 4 tcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagtac 61
|||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||
Sbjct: 11 tcctgtactgagctgccccgaggccc-tcactgtgcccagctcgggccagctcagtac 67
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 44 ctcggggcagctcagtacagga 65
||||||||||||||||||||||
Sbjct: 32 ctcggggcagctcagtacagga 11
>34105_ssc-mir-486-1:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 4 tcctgtactgagctgccccgaggccct 30
|||||||||||||||||||||||||||
Sbjct: 46 tcctgtactgagctgccccgaggccct 72
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 44 ctcggggcagctcagtacagga 65
||||||||||||||||||||||
Sbjct: 67 ctcggggcagctcagtacagga 46
