miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27928_mml-mir-490:mirbase
Length = 128
Score = 254 bits (128), Expect = 1e-68
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 1 tggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtca 60
Query: 61 agtttagagatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agtttagagatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcgga 120
Query: 121 cacttcca 128
||||||||
Sbjct: 121 cacttcca 128
>27929_mml-mir-490:mirbase
Length = 128
Score = 254 bits (128), Expect = 1e-68
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 1 tggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtca 60
Query: 61 agtttagagatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agtttagagatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcgga 120
Query: 121 cacttcca 128
||||||||
Sbjct: 121 cacttcca 128
>28680_hsa-mir-490:mirbase
Length = 128
Score = 254 bits (128), Expect = 1e-68
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 1 tggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtca 60
Query: 61 agtttagagatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agtttagagatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcgga 120
Query: 121 cacttcca 128
||||||||
Sbjct: 121 cacttcca 128
>30394_ptr-mir-490:mirbase
Length = 127
Score = 252 bits (127), Expect = 5e-68
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 2 ggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtcaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtcaa 60
Query: 62 gtttagagatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcggac 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtttagagatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcggac 120
Query: 122 acttcca 128
|||||||
Sbjct: 121 acttcca 127
>31027_ppy-mir-490:mirbase
Length = 128
Score = 246 bits (124), Expect = 3e-66
Identities = 127/128 (99%)
Strand = Plus / Plus
Query: 1 tggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtca 60
Query: 61 agtttagagatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcgga 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 61 agtttagagatgcaccaacctggaggactccatgctgttgagctgttcacgagcagcgga 120
Query: 121 cacttcca 128
||||||||
Sbjct: 121 cacttcca 128
>31028_ppy-mir-490:mirbase
Length = 128
Score = 246 bits (124), Expect = 3e-66
Identities = 127/128 (99%)
Strand = Plus / Plus
Query: 1 tggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtca 60
Query: 61 agtttagagatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcgga 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 61 agtttagagatgcaccaacctggaggactccatgctgttgagctgttcacgagcagcgga 120
Query: 121 cacttcca 128
||||||||
Sbjct: 121 cacttcca 128
>33396_bta-mir-490:mirbase
Length = 127
Score = 220 bits (111), Expect = 2e-58
Identities = 117/119 (98%)
Strand = Plus / Plus
Query: 8 cttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtcaagtttag 67
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 7 cttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttag 66
Query: 68 agatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcggacacttc 126
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 agatacaccaacctggaggactccatgctgttgagctgttcacaagcagcggacacttc 125
>26860_cfa-mir-490:mirbase
Length = 81
Score = 145 bits (73), Expect = 9e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 21 aaagttcattgttcgacaccatggatctccaggtgggtcaagtttagagatgcaccaacc 80
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 1 aaagttcattgttcgacaccatggatctccaggtgggtcacgtttagagatacaccaacc 60
Query: 81 tggaggactccatgctgttga 101
|||||||||||||||||||||
Sbjct: 61 tggaggactccatgctgttga 81
>32179_mmu-mir-490:mirbase
Length = 84
Score = 143 bits (72), Expect = 4e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 18 tggaaagttcattgttcgacaccatggatctccaggtgggtcaagtttagagatgcacca 77
||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct: 1 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 60
Query: 78 acctggaggactccatgctgttga 101
||||||||||||||||||||||||
Sbjct: 61 acctggaggactccatgctgttga 84
>32180_mmu-mir-490:mirbase
Length = 84
Score = 143 bits (72), Expect = 4e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 18 tggaaagttcattgttcgacaccatggatctccaggtgggtcaagtttagagatgcacca 77
||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct: 1 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 60
Query: 78 acctggaggactccatgctgttga 101
||||||||||||||||||||||||
Sbjct: 61 acctggaggactccatgctgttga 84
>32934_rno-mir-490:mirbase
Length = 84
Score = 143 bits (72), Expect = 4e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 18 tggaaagttcattgttcgacaccatggatctccaggtgggtcaagtttagagatgcacca 77
||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct: 1 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 60
Query: 78 acctggaggactccatgctgttga 101
||||||||||||||||||||||||
Sbjct: 61 acctggaggactccatgctgttga 84
>26041_gga-mir-490:mirbase
Length = 93
Score = 139 bits (70), Expect = 6e-34
Identities = 88/93 (94%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 22 aagttcattgttcgacaccatggatctccaggtgggtcaagttta--gagatgcaccaac 79
|||||||| |||||||||||||||||||||||||||||||| ||| ||||| |||||||
Sbjct: 1 aagttcatggttcgacaccatggatctccaggtgggtcaagattatagagatacaccaac 60
Query: 80 ctggaggactccatgctgttgagctgttcacaa 112
|||||||||||||||||||||||||||||||||
Sbjct: 61 ctggaggactccatgctgttgagctgttcacaa 93
>31560_oan-mir-490:mirbase
Length = 124
Score = 133 bits (67), Expect = 3e-32
Identities = 91/99 (91%)
Strand = Plus / Plus
Query: 17 ttggaaagttcattgttcgacaccatggatctccaggtgggtcaagtttagagatgcacc 76
|||||||||||| ||||||| |||||||||||||||||||||||| ||||||| |||||
Sbjct: 8 ttggaaagttcacggttcgacgccatggatctccaggtgggtcaaggttagagacgcacc 67
Query: 77 aacctggaggactccatgctgttgagctgttcacaagca 115
|||||||||||||||||||||| |||||| |||| ||||
Sbjct: 68 aacctggaggactccatgctgtcgagctgatcacgagca 106
>27196_eca-mir-490:mirbase
Length = 69
Score = 121 bits (61), Expect = 1e-28
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 33 tcgacaccatggatctccaggtgggtcaagtttagagatgcaccaacctggaggactcca 92
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 1 tcgacaccatggatctccaggtgggtcacgtttagagatacaccaacctggaggactcca 60
Query: 93 tgctgttga 101
|||||||||
Sbjct: 61 tgctgttga 69
>27197_eca-mir-490:mirbase
Length = 69
Score = 121 bits (61), Expect = 1e-28
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 33 tcgacaccatggatctccaggtgggtcaagtttagagatgcaccaacctggaggactcca 92
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 1 tcgacaccatggatctccaggtgggtcacgtttagagatacaccaacctggaggactcca 60
Query: 93 tgctgttga 101
|||||||||
Sbjct: 61 tgctgttga 69
>34108_ssc-mir-490:mirbase
Length = 79
Score = 117 bits (59), Expect = 2e-27
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 29 ttgttcgacaccatggatctccaggtgggtcaagtttagagatgcaccaacctggaggac 88
||||||||||||||||||| |||||||||||| |||| |||| ||||||||||||||||
Sbjct: 1 ttgttcgacaccatggatccccaggtgggtcacgtttcaagatacaccaacctggaggac 60
Query: 89 tccatgctgttgagctgtt 107
|||||||||||||||||||
Sbjct: 61 tccatgctgttgagctgtt 79
>26540_tgu-mir-490-1:mirbase
Length = 93
Score = 113 bits (57), Expect = 3e-26
Identities = 81/88 (92%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 23 agttcattgttcgacaccatggatctccaggtgggtcaagtt--tagagatgcaccaacc 80
||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||||||
Sbjct: 6 agttcatgcttcgacaccatggatctccaggtgggtcaagataatagagatacaccaacc 65
Query: 81 tggaggactccatgctgttgagctgttc 108
|||||||||||||||||| |||||||||
Sbjct: 66 tggaggactccatgctgtcgagctgttc 93
>26541_tgu-mir-490-2:mirbase
Length = 93
Score = 113 bits (57), Expect = 3e-26
Identities = 81/88 (92%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 23 agttcattgttcgacaccatggatctccaggtgggtcaagttta--gagatgcaccaacc 80
||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct: 6 agttcatgcttcgacaccatggatctccaggtgggtcaagattatagagatacaccaacc 65
Query: 81 tggaggactccatgctgttgagctgttc 108
|||||||||||||||||| |||||||||
Sbjct: 66 tggaggactccatgctgtcgagctgttc 93
